Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
RNF4P78317 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.02□□□□□ -1.44
RNF4P78317 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.02□□□□□ -1.45
RNF4P78317 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AC025809.2-201ENST00000625085 1802 ntBASIC6.02□□□□□ -1.45
RNF4P78317 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.02□□□□□ -1.45
RNF4P78317 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 Y_RNA.25-201ENST00000362528 102 ntBASIC6.02□□□□□ -1.45
RNF4P78317 Y_RNA.372-201ENST00000365599 102 ntBASIC6.02□□□□□ -1.45
RNF4P78317 Y_RNA.450-201ENST00000384198 113 ntBASIC6.02□□□□□ -1.45
RNF4P78317 YWHAZP6-201ENST00000399764 738 ntBASIC6.02□□□□□ -1.45
RNF4P78317 CIR1P3-201ENST00000405137 479 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AL136131.1-201ENST00000406079 803 ntBASIC6.02□□□□□ -1.45
RNF4P78317 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 RPS27AP14-201ENST00000422868 454 ntBASIC6.02□□□□□ -1.45
RNF4P78317 NPM1P22-201ENST00000427761 952 ntBASIC6.02□□□□□ -1.45
RNF4P78317 MTND4LP10-201ENST00000435146 291 ntBASIC6.02□□□□□ -1.45
RNF4P78317 LINC00328-2P-201ENST00000436585 219 ntBASIC6.02□□□□□ -1.45
RNF4P78317 PMS2P9-201ENST00000441237 515 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC011742.2-201ENST00000443818 352 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC112653.1-201ENST00000443851 386 ntBASIC6.02□□□□□ -1.45
RNF4P78317 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 ELOCP23-201ENST00000452014 332 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 AC098818.1-201ENST00000478593 252 ntBASIC6.02□□□□□ -1.45
RNF4P78317 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 AC091133.4-201ENST00000511142 308 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 OR6M2P-201ENST00000529831 871 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC6.02□□□□□ -1.45
RNF4P78317 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AC121758.1-202ENST00000556917 658 ntBASIC6.02□□□□□ -1.45
RNF4P78317 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC6.02□□□□□ -1.45
RNF4P78317 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 AC136618.2-201ENST00000575091 400 ntBASIC6.02□□□□□ -1.45
RNF4P78317 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.02□□□□□ -1.45
RNF4P78317 AC005730.3-201ENST00000583067 366 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AC063977.7-201ENST00000594454 337 ntBASIC6.02□□□□□ -1.45
RNF4P78317 AP003117.2-201ENST00000606010 545 ntBASIC6.02□□□□□ -1.45
RNF4P78317 RNU6-88P-201ENST00000606801 100 ntBASIC6.02□□□□□ -1.45
RNF4P78317 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 AC104458.1-201ENST00000608243 463 ntBASIC6.02□□□□□ -1.45
RNF4P78317 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.02□□□□□ -1.45
RNF4P78317 MRPL57P1-201ENST00000621486 265 ntBASIC6.02□□□□□ -1.45
RNF4P78317 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 LINC02495-203ENST00000636704 242 ntBASIC6.02□□□□□ -1.45
RNF4P78317 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
RNF4P78317 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
RNF4P78317 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.02□□□□□ -1.45
RNF4P78317 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
RNF4P78317 AL034370.1-201ENST00000397254 1590 ntBASIC6.01□□□□□ -1.45
RNF4P78317 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 CAP1P2-201ENST00000417455 1409 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AC093225.1-201ENST00000506867 1408 ntBASIC6.01□□□□□ -1.45
RNF4P78317 OLMALINC-203ENST00000641087 3779 ntBASIC6.01□□□□□ -1.45
RNF4P78317 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 AC012078.1-201ENST00000405035 1646 ntBASIC6.01□□□□□ -1.45
RNF4P78317 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.01□□□□□ -1.45
RNF4P78317 CUBN-201ENST00000377823 705 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 RNU6-1122P-201ENST00000384449 107 ntBASIC6.01□□□□□ -1.45
RNF4P78317 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
RNF4P78317 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
RNF4P78317 AL391419.1-201ENST00000398901 1275 ntBASIC6.01□□□□□ -1.45
RNF4P78317 CCNG1P1-201ENST00000406783 885 ntBASIC6.01□□□□□ -1.45
RNF4P78317 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.01□□□□□ -1.45
RNF4P78317 AC009237.5-201ENST00000414271 501 ntBASIC6.01□□□□□ -1.45
RNF4P78317 DPPA2P2-201ENST00000418220 897 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.01□□□□□ -1.45
RNF4P78317 MTCYBP24-201ENST00000420387 1106 ntBASIC6.01□□□□□ -1.45
RNF4P78317 AL139184.1-202ENST00000422303 222 ntBASIC6.01□□□□□ -1.45
RNF4P78317 CYCSP52-201ENST00000422857 310 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms