Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OR11H5P-202ENST00000641612 1325 ntBASIC3.42□□□□□ -1.86
FOXA3P55318 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
FOXA3P55318 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
FOXA3P55318 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 THAP12P4-201ENST00000528321 2266 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA3P55318 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 TMSB4XP4-201ENST00000323496 618 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 RNA5SP455-201ENST00000365190 119 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 GCNT6-201ENST00000379591 934 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 VN1R12P-201ENST00000403778 876 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 DPPA2P3-201ENST00000411853 655 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 TRIM60P17-201ENST00000415181 719 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 RPS20P1-201ENST00000434853 354 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 ELOCP8-201ENST00000439309 332 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 ELOCP15-201ENST00000442090 332 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AL137845.2-201ENST00000444292 988 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 AL451050.1-201ENST00000450126 415 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 AC243772.1-201ENST00000451620 410 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 ISCUP1-201ENST00000454451 448 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 RN7SL649P-201ENST00000496974 275 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 AC005363.1-201ENST00000530779 351 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC3.41□□□□□ -1.86
FOXA3P55318 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 AC022726.1-201ENST00000587475 207 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.41□□□□□ -1.86
FOXA3P55318 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC3.41□□□□□ -1.86
FOXA3P55318 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.41□□□□□ -1.86
FOXA3P55318 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 AP002505.2-201ENST00000623585 696 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.41□□□□□ -1.86
FOXA3P55318 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
FOXA3P55318 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
FOXA3P55318 HSPD1P11-201ENST00000508643 1702 ntBASIC3.41□□□□□ -1.86
FOXA3P55318 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC3.41□□□□□ -1.86
FOXA3P55318 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.4□□□□□ -1.86
FOXA3P55318 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
FOXA3P55318 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
FOXA3P55318 AL451142.2-201ENST00000429076 2090 ntBASIC3.4□□□□□ -1.86
FOXA3P55318 PNPT1P2-201ENST00000456768 2050 ntBASIC3.4□□□□□ -1.86
FOXA3P55318 AL133412.1-201ENST00000380194 2992 ntBASIC3.4□□□□□ -1.86
FOXA3P55318 VPS35P1-201ENST00000563400 1518 ntBASIC3.4□□□□□ -1.86
FOXA3P55318 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.4□□□□□ -1.86
FOXA3P55318 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
FOXA3P55318 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
FOXA3P55318 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.4□□□□□ -1.86
FOXA3P55318 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
FOXA3P55318 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXA3P55318 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 RNA5SP307-201ENST00000362863 116 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXA3P55318 RNU1-82P-201ENST00000390851 165 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC093719.1-202ENST00000392735 373 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA3P55318 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 RN7SKP59-201ENST00000410520 314 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 RNA5SP39-201ENST00000411245 120 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
FOXA3P55318 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXA3P55318 RWDD4P2-201ENST00000426392 563 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AL158073.1-201ENST00000426848 1104 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 RPS26P47-201ENST00000427219 348 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 CDY14P-201ENST00000431260 1014 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 YWHAEP5-201ENST00000431545 765 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXA3P55318 ELOCP18-201ENST00000434209 337 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 RPL23AP19-201ENST00000436229 369 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AP000936.3-201ENST00000438127 255 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA3P55318 CDY12P-201ENST00000440679 1015 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 CDY13P-201ENST00000445813 1015 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms