Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AC092647.1-201ENST00000420654 287 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AL139184.1-202ENST00000422303 222 ntBASIC6.56□□□□□ -1.36
LIG3P49916 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 AL590399.2-201ENST00000427536 309 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 UBE2V1P3-201ENST00000439651 417 ntBASIC6.56□□□□□ -1.36
LIG3P49916 ARAFP2-201ENST00000440565 559 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC092809.1-201ENST00000441469 474 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AL590004.3-202ENST00000445883 451 ntBASIC6.56□□□□□ -1.36
LIG3P49916 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 ARPC3P2-201ENST00000457786 533 ntBASIC6.56□□□□□ -1.36
LIG3P49916 RPL30P9-201ENST00000465586 330 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AL355032.1-201ENST00000472981 438 ntBASIC6.56□□□□□ -1.36
LIG3P49916 TMED11P-201ENST00000479478 690 ntBASIC6.56□□□□□ -1.36
LIG3P49916 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 MTCO1P30-201ENST00000515244 580 ntBASIC6.56□□□□□ -1.36
LIG3P49916 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.56□□□□□ -1.36
LIG3P49916 RN7SKP244-201ENST00000516513 307 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 AC010487.1-201ENST00000594408 1172 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC119501.1-201ENST00000603646 475 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC011451.2-201ENST00000604303 598 ntBASIC6.56□□□□□ -1.36
LIG3P49916 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG3P49916 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC018926.3-201ENST00000618841 406 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC092650.2-201ENST00000619984 902 ntBASIC6.56□□□□□ -1.36
LIG3P49916 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 IFIT1P1-201ENST00000400497 1449 ntBASIC6.56□□□□□ -1.36
LIG3P49916 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
LIG3P49916 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 AC022164.1-201ENST00000568767 2673 ntBASIC6.55□□□□□ -1.36
LIG3P49916 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
LIG3P49916 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 RNY4P24-201ENST00000362735 96 ntBASIC6.55□□□□□ -1.36
LIG3P49916 RN7SKP250-201ENST00000363924 321 ntBASIC6.55□□□□□ -1.36
LIG3P49916 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.55□□□□□ -1.36
LIG3P49916 AC104297.1-201ENST00000393779 870 ntBASIC6.55□□□□□ -1.36
LIG3P49916 RPL5P20-201ENST00000403848 896 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG3P49916 UBE2V1P8-201ENST00000437166 265 ntBASIC6.55□□□□□ -1.36
LIG3P49916 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.55□□□□□ -1.36
LIG3P49916 ARMC4P1-201ENST00000438905 707 ntBASIC6.55□□□□□ -1.36
LIG3P49916 RPS7P5-201ENST00000441482 581 ntBASIC6.55□□□□□ -1.36
LIG3P49916 Z83838.1-202ENST00000456225 839 ntBASIC6.55□□□□□ -1.36
LIG3P49916 OR9M1P-201ENST00000459641 921 ntBASIC6.55□□□□□ -1.36
LIG3P49916 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 AL117692.1-201ENST00000494283 713 ntBASIC6.55□□□□□ -1.36
LIG3P49916 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.55□□□□□ -1.36
LIG3P49916 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.55□□□□□ -1.36
LIG3P49916 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 AC239860.2-201ENST00000525886 270 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AP002453.2-201ENST00000533503 320 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC073916.1-201ENST00000545095 130 ntBASIC6.55□□□□□ -1.36
LIG3P49916 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 AC084757.1-201ENST00000559987 490 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 AC063977.7-201ENST00000594454 337 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG3P49916 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC6.55□□□□□ -1.36
LIG3P49916 AC004805.3-201ENST00000603178 310 ntBASIC6.55□□□□□ -1.36
LIG3P49916 AC011891.2-201ENST00000604949 397 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms