Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MTATP6P31-201ENST00000406985 692 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RPS7P2-201ENST00000435134 607 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 HSPE1P22-201ENST00000456856 327 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-599P-201ENST00000459383 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-1193P-201ENST00000459461 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC107398.1-201ENST00000486904 505 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC006499.3-201ENST00000506077 748 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC069306.1-201ENST00000507006 843 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 RNA5SP92-201ENST00000516437 110 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 OR8X1P-201ENST00000534542 869 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 AL121594.4-201ENST00000556211 1196 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.28□□□□□ -1.56
PTPN9P43378 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 DPRXP4-201ENST00000578053 568 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.28□□□□□ -1.56
PTPN9P43378 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.28□□□□□ -1.56
PTPN9P43378 AP002802.2-201ENST00000605877 235 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 AC112503.1-201ENST00000608436 391 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 VN1R9P-201ENST00000614184 867 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-368P-201ENST00000620928 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-538P-201ENST00000622329 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 AC009452.1-201ENST00000640823 606 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 LINC01739-205ENST00000641890 573 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 THAP12P4-201ENST00000528321 2266 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 CR788268.1-201ENST00000603931 1809 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 THAP12P5-201ENST00000405864 2275 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.27□□□□□ -1.57
PTPN9P43378 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
PTPN9P43378 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 RPL23P2-201ENST00000320371 421 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC104297.1-201ENST00000393779 870 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 SETP15-201ENST00000412724 337 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.27□□□□□ -1.57
PTPN9P43378 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC004854.1-201ENST00000440356 349 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AL450023.3-201ENST00000440592 271 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 TXNP5-201ENST00000441043 315 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC5.27□□□□□ -1.57
PTPN9P43378 AL163193.1-201ENST00000444895 788 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.27□□□□□ -1.57
PTPN9P43378 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC005532.2-201ENST00000467154 373 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 RPS18P6-201ENST00000476880 458 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC104982.1-201ENST00000478775 574 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC090114.3-201ENST00000479267 829 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC073073.1-201ENST00000493920 463 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC008427.1-201ENST00000503102 655 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC118282.1-201ENST00000506408 765 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 SCARNA21.2-201ENST00000516600 166 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC013701.1-201ENST00000522657 465 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.27□□□□□ -1.57
PTPN9P43378 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC5.27□□□□□ -1.57
PTPN9P43378 HAUS8P1-201ENST00000549005 542 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC116553.2-201ENST00000564203 463 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC105254.2-201ENST00000603636 436 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC090506.2-201ENST00000624521 419 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.27□□□□□ -1.57
PTPN9P43378 AC006927.2-201ENST00000639256 389 ntBASIC5.27□□□□□ -1.57
PTPN9P43378 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
PTPN9P43378 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms