Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL583832.1-201ENST00000603227 784 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AC112484.5-201ENST00000624189 228 ntBASIC5.43□□□□□ -1.54
SCN4AP35499 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SCN4AP35499 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SCN4AP35499 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.43□□□□□ -1.54
SCN4AP35499 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.42□□□□□ -1.54
SCN4AP35499 AL450345.1-202ENST00000605741 3881 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 TRIM51GP-201ENST00000534741 1350 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.42□□□□□ -1.54
SCN4AP35499 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SCN4AP35499 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 SNORA9-201ENST00000384215 133 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 RPL37P1-201ENST00000432310 284 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.42□□□□□ -1.54
SCN4AP35499 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SCN4AP35499 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 MYL12BP2-201ENST00000503948 512 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 AC015914.2-201ENST00000618167 288 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 MIR8059-201ENST00000620427 81 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 TMEM30CP-203ENST00000637814 1035 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.42□□□□□ -1.54
SCN4AP35499 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 AL031119.1-201ENST00000404707 1879 ntBASIC5.42□□□□□ -1.54
SCN4AP35499 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SCN4AP35499 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.42□□□□□ -1.54
SCN4AP35499 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.41□□□□□ -1.54
SCN4AP35499 AL050321.1-201ENST00000432363 400 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 RPL12P18-201ENST00000437175 325 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 CYCSP24-201ENST00000445119 316 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 ABCC13-202ENST00000463099 3842 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 RNU6-513P-201ENST00000516104 104 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.41□□□□□ -1.54
SCN4AP35499 FRG1EP-201ENST00000634469 770 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.41□□□□□ -1.54
SCN4AP35499 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.41□□□□□ -1.54
SCN4AP35499 AC011447.7-201ENST00000624228 1590 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.41□□□□□ -1.54
SCN4AP35499 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
SCN4AP35499 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 AC007738.1-201ENST00000413892 348 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.41□□□□□ -1.54
SCN4AP35499 RPL7P2-201ENST00000427639 268 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 YME1L1P1-201ENST00000429435 297 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AL117339.2-201ENST00000430475 180 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 ARL4AP4-201ENST00000434170 518 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 RPL23AP52-201ENST00000439311 478 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 RPL23AP43-201ENST00000446445 471 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AC245028.2-201ENST00000458673 253 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.41□□□□□ -1.54
SCN4AP35499 AC053481.4-201ENST00000583164 216 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 MIR4298-201ENST00000584380 73 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 RNU4-89P-201ENST00000607443 133 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AC069200.1-201ENST00000609511 323 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AC244100.1-202ENST00000621554 382 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 AC063952.1-203ENST00000634410 658 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.41□□□□□ -1.54
SCN4AP35499 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
SCN4AP35499 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 AL137058.3-201ENST00000624531 3099 ntBASIC5.41□□□□□ -1.54
SCN4AP35499 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SCN4AP35499 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
SCN4AP35499 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SCN4AP35499 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.4□□□□□ -1.54
SCN4AP35499 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.4□□□□□ -1.54
SCN4AP35499 AC011755.1-201ENST00000623763 2049 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AC125336.1-201ENST00000508893 2827 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AC104260.2-201ENST00000623551 3497 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 RNA5SP119-201ENST00000362715 117 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 RNU1-132P-201ENST00000364300 164 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 COX5BP7-201ENST00000414780 274 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.4□□□□□ -1.54
SCN4AP35499 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SCN4AP35499 AC146944.2-203ENST00000502493 354 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.4□□□□□ -1.54
SCN4AP35499 AC016559.2-201ENST00000510759 359 ntBASIC5.4□□□□□ -1.54
SCN4AP35499 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms