Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXD4P09016 AC105254.2-201ENST00000603636 436 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 AL031320.1-201ENST00000604177 357 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 SNORD91B-202ENST00000608459 222 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 IRF5P1-201ENST00000504852 2164 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXD4P09016 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.54□□□□□ -1.68
HOXD4P09016 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXD4P09016 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
HOXD4P09016 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 AC132825.1-201ENST00000463573 2247 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 TLK1P1-201ENST00000456760 2440 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 AC027228.2-201ENST00000567141 2154 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC233289.1-201ENST00000403700 508 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 RNU2-50P-201ENST00000410494 143 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AC007738.1-201ENST00000413892 348 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 HMGB3P10-201ENST00000434734 572 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 GSTA7P-201ENST00000438425 448 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 NOP56P2-201ENST00000447491 769 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXD4P09016 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 RN7SL814P-201ENST00000487715 300 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC008897.1-201ENST00000494006 347 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXD4P09016 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXD4P09016 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXD4P09016 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.53□□□□□ -1.68
HOXD4P09016 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXD4P09016 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 TVP23CP2-201ENST00000571473 623 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXD4P09016 AL627230.1-201ENST00000613077 211 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 AL591926.8-201ENST00000616876 211 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 LINC00901.1-201ENST00000617252 152 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 MIR6839-201ENST00000620425 113 ntBASIC4.53□□□□□ -1.68
HOXD4P09016 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.53□□□□□ -1.68
HOXD4P09016 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HOXD4P09016 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.53□□□□□ -1.69
HOXD4P09016 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXD4P09016 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 SALL4P2-201ENST00000423288 2910 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 RNU1-32P-201ENST00000363937 159 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 FAR1P1-201ENST00000427163 934 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 COX6CP13-201ENST00000428703 226 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AC007559.1-201ENST00000428736 355 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AC091390.1-201ENST00000433904 331 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXD4P09016 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC112498.1-201ENST00000444401 332 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 RBMY2TP-201ENST00000451162 947 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXD4P09016 AL513533.1-201ENST00000453728 415 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AL445433.1-201ENST00000457507 257 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 AC112206.1-201ENST00000468416 477 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 IGLV2-34-201ENST00000490007 283 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 RN7SL441P-201ENST00000492388 296 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXD4P09016 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HOXD4P09016 MTND3P3-201ENST00000505004 126 ntBASIC4.52□□□□□ -1.69
HOXD4P09016 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXD4P09016 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms