Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 IRF5P1-201ENST00000504852 2164 ntBASIC4.55□□□□□ -1.68
CLDN9O95484 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
CLDN9O95484 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.55□□□□□ -1.68
CLDN9O95484 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 RN7SKP115-201ENST00000363177 317 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 AL591848.1-201ENST00000413092 322 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC012519.1-201ENST00000424588 610 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 OR2B7P-201ENST00000429302 934 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 PSMD10P3-201ENST00000437000 448 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.54□□□□□ -1.68
CLDN9O95484 RPS4XP18-201ENST00000495480 763 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.54□□□□□ -1.68
CLDN9O95484 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 OR5AZ1P-201ENST00000527448 943 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC021006.3-201ENST00000530771 192 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.54□□□□□ -1.68
CLDN9O95484 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC015912.2-201ENST00000571053 181 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC023813.4-201ENST00000607580 580 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AC007620.3-201ENST00000608131 497 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.54□□□□□ -1.68
CLDN9O95484 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 AL672167.1-203ENST00000641299 2975 ntBASIC4.54□□□□□ -1.68
CLDN9O95484 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.54□□□□□ -1.68
CLDN9O95484 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CLDN9O95484 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
CLDN9O95484 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
CLDN9O95484 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN9O95484 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CLDN9O95484 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
CLDN9O95484 VDAC2P1-201ENST00000399358 958 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 MIR921-201ENST00000401133 56 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AL589647.1-201ENST00000402485 466 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RN7SKP247-201ENST00000411094 308 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 OR51B3P-201ENST00000412287 913 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN9O95484 HMGB1P32-201ENST00000425971 565 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AC006455.6-201ENST00000426192 893 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN9O95484 H2AFZP5-201ENST00000446960 382 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 OR1H1P-201ENST00000448731 937 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 CCRL1P1-201ENST00000449542 1053 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RPL31P20-201ENST00000449593 360 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RPL7P61-201ENST00000451721 751 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RPL35AP28-201ENST00000459730 331 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 RN7SL346P-201ENST00000491561 294 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 SCARNA22-201ENST00000503991 125 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 BTG4P1-201ENST00000510421 183 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN9O95484 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.53□□□□□ -1.68
CLDN9O95484 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN9O95484 BGLT3-201ENST00000564523 994 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN9O95484 MIR4436B2-201ENST00000581415 91 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 MIR4436B1-201ENST00000583272 91 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN9O95484 AL391358.1-201ENST00000605342 190 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 MIR7155-201ENST00000615925 56 ntBASIC4.53□□□□□ -1.68
CLDN9O95484 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN9O95484 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 150.3 ms