Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC025031.4-201ENST00000621248 3271 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AC003985.2-201ENST00000562268 1669 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
COL5A1P20908 TRAV35-201ENST00000390462 330 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 RPL23AP26-201ENST00000412728 464 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A1P20908 RPL7P33-201ENST00000444159 742 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.41□□□□□ -1.7
COL5A1P20908 NUTF2P3-201ENST00000448540 384 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AK4P6-201ENST00000505168 528 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A1P20908 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.41□□□□□ -1.7
COL5A1P20908 AC090515.3-201ENST00000560431 315 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 AC024220.1-201ENST00000603675 484 ntBASIC4.41□□□□□ -1.7
COL5A1P20908 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC4.41□□□□□ -1.7
COL5A1P20908 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.41□□□□□ -1.7
COL5A1P20908 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.41□□□□□ -1.7
COL5A1P20908 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL5A1P20908 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
COL5A1P20908 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.4□□□□□ -1.7
COL5A1P20908 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.4□□□□□ -1.7
COL5A1P20908 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.4□□□□□ -1.7
COL5A1P20908 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.4□□□□□ -1.7
COL5A1P20908 BCORP1-203ENST00000513194 5093 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 MFSD8-242ENST00000641690 4199 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.4□□□□□ -1.7
COL5A1P20908 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 AL132765.1-201ENST00000434165 553 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 AC041039.1-201ENST00000485656 536 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 AC073073.1-201ENST00000493920 463 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.4□□□□□ -1.7
COL5A1P20908 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.4□□□□□ -1.7
COL5A1P20908 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.4□□□□□ -1.7
COL5A1P20908 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.4□□□□□ -1.7
COL5A1P20908 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.4□□□□□ -1.7
COL5A1P20908 AL356863.1-201ENST00000623378 1080 ntBASIC4.4□□□□□ -1.7
COL5A1P20908 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL5A1P20908 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
COL5A1P20908 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A1P20908 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A1P20908 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL5A1P20908 AL627171.1-201ENST00000618845 1308 ntBASIC4.4□□□□□ -1.71
COL5A1P20908 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL5A1P20908 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.4□□□□□ -1.71
COL5A1P20908 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.4□□□□□ -1.71
COL5A1P20908 MIR554-201ENST00000384874 96 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 PPIAP31-201ENST00000405422 495 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 EIF4A1P3-201ENST00000411521 244 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 RPS3AP25-201ENST00000411660 793 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 RCC2P2-201ENST00000422174 918 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 COX6CP15-201ENST00000426313 211 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 FTH1P16-201ENST00000435241 552 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.39□□□□□ -1.71
COL5A1P20908 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.39□□□□□ -1.71
COL5A1P20908 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
COL5A1P20908 LINC00622-201ENST00000562811 1570 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.39□□□□□ -1.71
COL5A1P20908 AC099676.1-201ENST00000608886 657 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.39□□□□□ -1.71
COL5A1P20908 OR8G7P-201ENST00000616658 848 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 AC009120.7-201ENST00000623452 780 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
COL5A1P20908 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL5A1P20908 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL5A1P20908 CPHL1P-201ENST00000461341 3407 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 SNORA71.3-201ENST00000362582 128 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 Y_RNA.333-201ENST00000365274 102 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 PEX12P1-201ENST00000400284 1048 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 DHFRP3-201ENST00000455595 559 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 AL591473.1-201ENST00000464297 313 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.39□□□□□ -1.71
COL5A1P20908 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL5A1P20908 AC098799.3-201ENST00000506095 438 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 MIR2116-201ENST00000517221 80 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.39□□□□□ -1.71
COL5A1P20908 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.39□□□□□ -1.71
COL5A1P20908 AC006065.6-201ENST00000625201 545 ntBASIC4.39□□□□□ -1.71
COL5A1P20908 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.39□□□□□ -1.71
COL5A1P20908 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL5A1P20908 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL5A1P20908 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL5A1P20908 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.38□□□□□ -1.71
COL5A1P20908 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms