Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 AC010478.1-201ENST00000601500 6762 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.14□□□□□ -1.91
PRKDCP78527 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.14□□□□□ -1.91
PRKDCP78527 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.14□□□□□ -1.91
PRKDCP78527 WBP1LP4-201ENST00000505043 344 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 AC105233.3-201ENST00000531125 744 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC3.14□□□□□ -1.91
PRKDCP78527 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.14□□□□□ -1.91
PRKDCP78527 OR7A19P-201ENST00000608051 733 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 UQCRC2P1-201ENST00000417777 1332 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 TEK-205ENST00000615002 4666 ntTSL 5 BASIC3.14□□□□□ -1.91
PRKDCP78527 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 MIR128-1-201ENST00000384921 82 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 OR4F13P-201ENST00000428478 931 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC3.14□□□□□ -1.91
PRKDCP78527 FTH1P9-201ENST00000513251 355 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC3.14□□□□□ -1.91
PRKDCP78527 AC233263.6-201ENST00000631132 1963 ntBASIC3.14□□□□□ -1.91
PRKDCP78527 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC3.14□□□□□ -1.91
PRKDCP78527 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
PRKDCP78527 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
PRKDCP78527 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRKDCP78527 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC3.14□□□□□ -1.91
PRKDCP78527 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 RNU6-213P-201ENST00000384051 104 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 RN7SKP156-201ENST00000410308 342 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 PRDX3P3-201ENST00000447765 522 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 AL136126.1-201ENST00000473603 402 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 AL137141.1-201ENST00000624622 4836 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
PRKDCP78527 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
PRKDCP78527 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 AC037471.2-201ENST00000564941 598 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 AC023762.1-201ENST00000603280 584 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 AC113403.1-201ENST00000604910 193 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 AL133243.3-201ENST00000617415 3004 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 MIR331-201ENST00000362302 94 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 AL035696.2-201ENST00000407941 709 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 BX510359.1-201ENST00000456973 237 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 ENSA-211ENST00000503345 793 ntTSL 3 BASIC3.13□□□□□ -1.91
PRKDCP78527 Y_RNA.719-201ENST00000517156 106 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 BNIP3P10-201ENST00000605360 577 ntBASIC3.13□□□□□ -1.91
PRKDCP78527 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC3.13□□□□□ -1.91
PRKDCP78527 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.13□□□□□ -1.91
PRKDCP78527 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC3.13□□□□□ -1.91
PRKDCP78527 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PRKDCP78527 AC114495.1-201ENST00000441274 436 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 RPS26P28-201ENST00000470806 348 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 RPS27AP1-201ENST00000475545 471 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 MIR3945-201ENST00000581853 98 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 PRELID3BP3-201ENST00000584963 545 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 MIR5684-201ENST00000585074 65 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC007786.3-201ENST00000615154 596 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms