Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL3A1P02461 THAP12P5-201ENST00000405864 2275 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL3A1P02461 HSFY4P-201ENST00000415994 1181 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 CETN4P-201ENST00000432407 469 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC6.14□□□□□ -1.43
COL3A1P02461 TPT1P13-201ENST00000449760 499 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.14□□□□□ -1.43
COL3A1P02461 AC091153.1-201ENST00000466297 402 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 GTF2IP9-201ENST00000502460 301 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AP001372.4-201ENST00000524889 472 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AP001636.2-201ENST00000525517 696 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.14□□□□□ -1.43
COL3A1P02461 AC091515.1-201ENST00000548110 679 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC6.14□□□□□ -1.43
COL3A1P02461 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC6.14□□□□□ -1.43
COL3A1P02461 AC020915.5-201ENST00000596836 964 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 BNIP3P31-201ENST00000604515 566 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AL161912.3-201ENST00000605404 628 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AL121873.1-201ENST00000616013 524 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 AL359757.1-201ENST00000623176 255 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC6.14□□□□□ -1.43
COL3A1P02461 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL3A1P02461 AC105074.1-201ENST00000623380 3095 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL3A1P02461 DNM1P47-203ENST00000571780 12667 ntBASIC6.14□□□□□ -1.43
COL3A1P02461 MTCO1P4-201ENST00000520516 1409 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 SNORA71.2-201ENST00000364941 134 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 OR1F12-201ENST00000402365 945 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC6.13□□□□□ -1.43
COL3A1P02461 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 AC016712.1-201ENST00000431088 378 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 MTCO2P3-201ENST00000442543 421 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC6.13□□□□□ -1.43
COL3A1P02461 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC6.13□□□□□ -1.43
COL3A1P02461 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC6.13□□□□□ -1.43
COL3A1P02461 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 AK5-208ENST00000478255 556 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 STRADBP1-201ENST00000478954 1281 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 AC013356.1-201ENST00000489027 564 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 HMGB3P16-201ENST00000508037 287 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL3A1P02461 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.13□□□□□ -1.43
COL3A1P02461 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 AP005212.4-201ENST00000614206 710 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 AP003485.1-201ENST00000625093 753 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 MTND2P41-201ENST00000637599 773 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 AC068137.4-201ENST00000638485 296 ntBASIC6.13□□□□□ -1.43
COL3A1P02461 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL3A1P02461 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.13□□□□□ -1.43
COL3A1P02461 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.13□□□□□ -1.43
COL3A1P02461 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL3A1P02461 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL3A1P02461 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC6.12□□□□□ -1.43
COL3A1P02461 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL3A1P02461 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.12□□□□□ -1.43
COL3A1P02461 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 AC017079.1-201ENST00000333650 415 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 RNU1-130P-201ENST00000363930 160 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL3A1P02461 GLS-204ENST00000409428 816 ntTSL 2 BASIC6.12□□□□□ -1.43
COL3A1P02461 RPL7AP25-201ENST00000423357 805 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 OR2AH1P-201ENST00000425717 928 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 AC012512.1-201ENST00000446594 718 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 ZNF736P6Y-201ENST00000447526 1213 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 ISCUP1-201ENST00000454451 448 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 RPL7AP10-201ENST00000481016 791 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 AC023136.1-201ENST00000513093 1105 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL3A1P02461 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC6.12□□□□□ -1.43
COL3A1P02461 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC6.12□□□□□ -1.43
COL3A1P02461 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC6.12□□□□□ -1.43
COL3A1P02461 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC6.12□□□□□ -1.43
COL3A1P02461 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC6.12□□□□□ -1.43
COL3A1P02461 MTND3P12-201ENST00000559068 328 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC6.12□□□□□ -1.43
COL3A1P02461 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC6.12□□□□□ -1.43
COL3A1P02461 OR1AB1P-201ENST00000585564 761 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 AC023762.1-201ENST00000603280 584 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 NF1P10-201ENST00000613227 742 ntBASIC6.12□□□□□ -1.43
COL3A1P02461 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.12□□□□□ -1.43
COL3A1P02461 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC6.12□□□□□ -1.43
COL3A1P02461 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms