Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SIGLEC31P-201ENST00000594237 551 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC008277.2-201ENST00000605196 797 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL365503.1-201ENST00000605247 905 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 MIR98-201ENST00000606724 119 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC011816.2-201ENST00000607089 556 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 OR10AB1P-201ENST00000609613 938 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL133173.2-201ENST00000614270 90 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AL445264.1-201ENST00000621719 171 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC007347.2-201ENST00000623044 180 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC012629.3-201ENST00000623397 328 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC009033.1-201ENST00000624279 431 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 NCOA4P3-201ENST00000513203 1877 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 MTND4P29-201ENST00000503122 1372 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC068733.2-201ENST00000605434 1418 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 AC024560.2-201ENST00000507981 1497 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 SFTPD-AS1-201ENST00000608229 5001 ntBASIC5.38□□□□□ -1.55
CCDC140Q96MF4 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC140Q96MF4 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 HSPD1P8-201ENST00000400121 1658 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL589993.1-201ENST00000407450 2524 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RNU6-1085P-201ENST00000363576 107 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RNA5SP355-201ENST00000365317 135 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RNU6-483P-201ENST00000384088 108 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MT-TL1-201ENST00000386347 75 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RN7SKP285-201ENST00000410137 318 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RNU2-50P-201ENST00000410494 143 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC069218.2-201ENST00000411665 344 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PPIAP23-201ENST00000420099 497 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MTCO2P5-201ENST00000422621 426 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 FDPSP6-201ENST00000425091 512 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MTND4P28-201ENST00000426217 387 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TRIM60P3Y-201ENST00000432201 673 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC091390.2-201ENST00000432573 374 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PSMD10P2-201ENST00000432890 672 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RPS4XP19-201ENST00000460237 736 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC025271.1-201ENST00000485045 429 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC095057.1-201ENST00000507583 168 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 DCAF13P2-201ENST00000514188 555 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 IGHVII-49-1-201ENST00000521760 224 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC109635.3-201ENST00000529536 185 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC079362.1-202ENST00000547089 278 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 RN7SL689P-201ENST00000577215 297 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC140Q96MF4 AC011447.2-201ENST00000592921 283 ntBASIC5.37□□□□□ -1.55
CCDC140Q96MF4 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms