Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC092902.1-201ENST00000486999 259 ntBASIC4.97□□□□□ -1.61
MSH3P20585 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.97□□□□□ -1.61
MSH3P20585 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.97□□□□□ -1.61
MSH3P20585 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.97□□□□□ -1.61
MSH3P20585 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.97□□□□□ -1.61
MSH3P20585 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 AC079148.1-201ENST00000565944 819 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.97□□□□□ -1.61
MSH3P20585 AC135178.6-201ENST00000605314 398 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AC012213.4-201ENST00000606457 354 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AL445222.1-201ENST00000607259 628 ntBASIC4.97□□□□□ -1.61
MSH3P20585 CR589904.2-201ENST00000612533 440 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AL627230.1-201ENST00000613077 211 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AC037198.3-201ENST00000616754 526 ntBASIC4.97□□□□□ -1.61
MSH3P20585 AL591926.8-201ENST00000616876 211 ntBASIC4.97□□□□□ -1.61
MSH3P20585 MIR6719-201ENST00000622428 87 ntBASIC4.97□□□□□ -1.61
MSH3P20585 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSH3P20585 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.97□□□□□ -1.61
MSH3P20585 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSH3P20585 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSH3P20585 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.97□□□□□ -1.61
MSH3P20585 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSH3P20585 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.96□□□□□ -1.61
MSH3P20585 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
MSH3P20585 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 BTBD10P1-201ENST00000549824 1352 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC009501.3-201ENST00000605001 1352 ntBASIC4.96□□□□□ -1.62
MSH3P20585 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 RNU4-44P-201ENST00000363050 141 ntBASIC4.96□□□□□ -1.62
MSH3P20585 RNA5SP428-201ENST00000365129 132 ntBASIC4.96□□□□□ -1.62
MSH3P20585 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 AL078599.1-201ENST00000402075 293 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AL021331.1-201ENST00000402817 582 ntBASIC4.96□□□□□ -1.62
MSH3P20585 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
MSH3P20585 BMS1P13-201ENST00000417301 885 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC013429.2-201ENST00000418798 781 ntBASIC4.96□□□□□ -1.62
MSH3P20585 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC4.96□□□□□ -1.62
MSH3P20585 ELOCP6-201ENST00000429066 328 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.96□□□□□ -1.62
MSH3P20585 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 PTMAP6-201ENST00000439110 327 ntBASIC4.96□□□□□ -1.62
MSH3P20585 RPS29P9-201ENST00000440360 171 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC007000.2-201ENST00000442564 487 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 HMGB1P4-201ENST00000455362 567 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC093166.2-201ENST00000455969 1017 ntBASIC4.96□□□□□ -1.62
MSH3P20585 ELOCP12-201ENST00000458706 328 ntBASIC4.96□□□□□ -1.62
MSH3P20585 snoU13.20-201ENST00000459180 104 ntBASIC4.96□□□□□ -1.62
MSH3P20585 RN7SL515P-201ENST00000463999 297 ntBASIC4.96□□□□□ -1.62
MSH3P20585 CABYRP1-201ENST00000465493 1045 ntBASIC4.96□□□□□ -1.62
MSH3P20585 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 RN7SL808P-201ENST00000496066 299 ntBASIC4.96□□□□□ -1.62
MSH3P20585 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 RNU6-1102P-201ENST00000516149 96 ntBASIC4.96□□□□□ -1.62
MSH3P20585 RNA5SP43-201ENST00000516559 110 ntBASIC4.96□□□□□ -1.62
MSH3P20585 VTA1P2-201ENST00000520205 911 ntBASIC4.96□□□□□ -1.62
MSH3P20585 RPL23AP53-201ENST00000521854 457 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 AC012339.2-201ENST00000523996 453 ntBASIC4.96□□□□□ -1.62
MSH3P20585 EIF4A2P5-201ENST00000529914 499 ntBASIC4.96□□□□□ -1.62
MSH3P20585 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 AL512310.9-201ENST00000553311 948 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AL358913.1-201ENST00000554342 121 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AGGF1P9-201ENST00000561884 913 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC126365.2-201ENST00000580630 379 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 MIR4691-201ENST00000583764 85 ntBASIC4.96□□□□□ -1.62
MSH3P20585 AC015911.5-201ENST00000587076 451 ntBASIC4.96□□□□□ -1.62
MSH3P20585 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
MSH3P20585 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.96□□□□□ -1.62
MSH3P20585 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.96□□□□□ -1.62
MSH3P20585 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
MSH3P20585 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.96□□□□□ -1.62
MSH3P20585 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSH3P20585 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSH3P20585 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
MSH3P20585 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms