Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL6A1P12109 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.4
COL6A1P12109 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC025263.3-201ENST00000622965 1396 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 DDX18P5-201ENST00000534547 1306 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 AC026951.1-201ENST00000559530 2459 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 Y_RNA.51-201ENST00000362725 102 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 RNA5SP335-201ENST00000363817 110 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 SNORA11-201ENST00000408789 128 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 RPL26P37-201ENST00000411983 438 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 OFD1P11Y-201ENST00000418213 1177 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AL133325.1-201ENST00000421090 382 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AL365203.2-201ENST00000423444 196 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 PTENP1-201ENST00000447117 1215 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 AL389915.2-201ENST00000454576 441 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 ACA64.4-201ENST00000459070 127 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC005410.1-202ENST00000460347 485 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC096741.1-201ENST00000472250 846 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 RPS18P6-201ENST00000476880 458 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 FTH1P8-201ENST00000498161 514 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC091951.3-201ENST00000504093 246 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 SNRPCP2-201ENST00000504370 475 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC074255.1-201ENST00000511259 501 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC010625.1-201ENST00000511296 403 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC110775.1-201ENST00000513721 462 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 RN7SKP248-201ENST00000516278 305 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC020937.1-201ENST00000519677 1013 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.33□□□□□ -1.4
COL6A1P12109 AL354943.1-201ENST00000572103 781 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC011840.5-201ENST00000582125 771 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC6.33□□□□□ -1.4
COL6A1P12109 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC011497.2-201ENST00000600255 639 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC012616.1-201ENST00000600294 197 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 TAS2R6P-201ENST00000605022 826 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC006338.2-201ENST00000616864 791 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AC084035.1-201ENST00000634543 607 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL6A1P12109 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL6A1P12109 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.33□□□□□ -1.4
COL6A1P12109 AC022034.1-201ENST00000512867 2156 ntBASIC6.33□□□□□ -1.4
COL6A1P12109 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 SPATA2P1-201ENST00000431223 2055 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 AL022323.4-201ENST00000623980 13120 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 RNA5SP339-201ENST00000390987 122 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AL360271.1-201ENST00000395679 510 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AP003170.5-201ENST00000397185 335 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.32□□□□□ -1.4
COL6A1P12109 RPL26P29-201ENST00000415623 438 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL6A1P12109 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.32□□□□□ -1.4
COL6A1P12109 AC007568.1-201ENST00000422912 471 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 MTND4P20-201ENST00000424125 869 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AC108075.1-201ENST00000424692 529 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AC016027.5-201ENST00000427227 210 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC6.32□□□□□ -1.4
COL6A1P12109 AL353898.1-201ENST00000444055 238 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 HSFY3P-201ENST00000444242 1191 ntBASIC6.32□□□□□ -1.4
COL6A1P12109 AL162739.1-201ENST00000450606 307 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms