Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GLS-204ENST00000409428 816 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 FABP7P2-201ENST00000429946 379 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 PRPF38AP2-201ENST00000438179 851 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 PA2G4P6-201ENST00000438325 1197 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC006466.1-201ENST00000438721 289 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 HIGD1AP8-201ENST00000453927 274 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AL445433.1-201ENST00000457507 257 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 OR5D15P-201ENST00000531671 942 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 EDDM3DP-201ENST00000554692 434 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 TVP23CP2-201ENST00000571473 623 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC011487.3-201ENST00000593607 453 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 RNF138P2-201ENST00000603490 592 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC096553.1-201ENST00000605169 829 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 IMMP1LP1-201ENST00000605170 488 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC100827.5-201ENST00000615883 426 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AL445528.2-201ENST00000620582 470 ntBASIC3.65□□□□□ -1.83
HLA-DMBP28068 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.65□□□□□ -1.83
HLA-DMBP28068 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HLA-DMBP28068 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 MIR585-201ENST00000384887 94 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 ATP5F1P2-201ENST00000398143 760 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL109941.1-201ENST00000401925 229 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 Z97832.1-201ENST00000402490 328 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 RNA5SP345-201ENST00000410646 108 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC073136.2-201ENST00000417282 849 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 GTF2IP2-201ENST00000424290 697 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 NMNAT1P2-201ENST00000435192 860 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC073648.4-201ENST00000442655 781 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 RPS4XP18-201ENST00000495480 763 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 RN7SL558P-201ENST00000497468 299 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 UBE2Q2P10-201ENST00000514854 900 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 PCNPP1-201ENST00000552501 511 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 FKBP1BP1-201ENST00000553366 325 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC087783.2-201ENST00000605070 562 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL356752.1-201ENST00000615844 593 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL023881.1-201ENST00000621088 301 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 TLK1P1-201ENST00000456760 2440 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC3.64□□□□□ -1.83
HLA-DMBP28068 INTS6P1-201ENST00000504674 2530 ntBASIC3.64□□□□□ -1.83
HLA-DMBP28068 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HLA-DMBP28068 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC093775.1-201ENST00000624154 1868 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 OR10J6P-201ENST00000289731 930 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 SNORA51.8-201ENST00000384234 132 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 SNORD96B-201ENST00000386148 79 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AP000580.1-201ENST00000404439 358 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AL080315.1-201ENST00000406055 466 ntBASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC3.63□□□□□ -1.83
HLA-DMBP28068 RPS26P13-201ENST00000419030 330 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms