Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPL21P89-201ENST00000444021 467 ntBASIC7.58□□□□□ -1.2
CUX1P39880 RGS5-218ENST00000526176 574 ntTSL 4 BASIC7.58□□□□□ -1.2
CUX1P39880 AC006116.5-201ENST00000591936 559 ntBASIC7.58□□□□□ -1.2
CUX1P39880 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 SCARNA15-201ENST00000607520 4325 ntBASIC7.58□□□□□ -1.2
CUX1P39880 ACTR3BP5-201ENST00000448440 1479 ntBASIC7.58□□□□□ -1.2
CUX1P39880 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC7.58□□□□□ -1.2
CUX1P39880 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
CUX1P39880 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
CUX1P39880 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
CUX1P39880 SNORA70.4-201ENST00000365509 134 ntBASIC7.57□□□□□ -1.2
CUX1P39880 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 RCC2P2-201ENST00000422174 918 ntBASIC7.57□□□□□ -1.2
CUX1P39880 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 BTF3P6-201ENST00000448054 499 ntBASIC7.57□□□□□ -1.2
CUX1P39880 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 AC053481.3-201ENST00000577881 843 ntBASIC7.57□□□□□ -1.2
CUX1P39880 MIR3158-1-201ENST00000583596 81 ntBASIC7.57□□□□□ -1.2
CUX1P39880 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 OR8G7P-201ENST00000616658 848 ntBASIC7.57□□□□□ -1.2
CUX1P39880 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC7.57□□□□□ -1.2
CUX1P39880 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
CUX1P39880 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
CUX1P39880 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
CUX1P39880 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC7.57□□□□□ -1.2
CUX1P39880 OR13Z1P-201ENST00000416141 834 ntBASIC7.57□□□□□ -1.2
CUX1P39880 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 RPL7P33-201ENST00000444159 742 ntBASIC7.57□□□□□ -1.2
CUX1P39880 RPS7P7-201ENST00000463499 571 ntBASIC7.57□□□□□ -1.2
CUX1P39880 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC7.57□□□□□ -1.2
CUX1P39880 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
CUX1P39880 AC006349.1-201ENST00000555526 235 ntBASIC7.57□□□□□ -1.2
CUX1P39880 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC7.57□□□□□ -1.2
CUX1P39880 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC7.57□□□□□ -1.2
CUX1P39880 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CUX1P39880 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC7.56□□□□□ -1.2
CUX1P39880 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
CUX1P39880 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CUX1P39880 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
CUX1P39880 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC7.56□□□□□ -1.2
CUX1P39880 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC7.56□□□□□ -1.2
CUX1P39880 MEG8-217ENST00000556637 924 ntTSL 5 BASIC7.56□□□□□ -1.2
CUX1P39880 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC7.56□□□□□ -1.2
CUX1P39880 AL354984.3-201ENST00000604803 325 ntBASIC7.56□□□□□ -1.2
CUX1P39880 uc_338.13-201ENST00000618243 179 ntBASIC7.56□□□□□ -1.2
CUX1P39880 MIR8059-201ENST00000620427 81 ntBASIC7.56□□□□□ -1.2
CUX1P39880 AC039056.2-201ENST00000622261 511 ntBASIC7.56□□□□□ -1.2
CUX1P39880 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC7.56□□□□□ -1.2
CUX1P39880 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC7.56□□□□□ -1.2
CUX1P39880 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CUX1P39880 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.56□□□□□ -1.2
CUX1P39880 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
CUX1P39880 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.55□□□□□ -1.2
CUX1P39880 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
CUX1P39880 SNRPFP1-201ENST00000414761 252 ntBASIC7.55□□□□□ -1.2
CUX1P39880 CYCSP24-201ENST00000445119 316 ntBASIC7.55□□□□□ -1.2
CUX1P39880 AL132838.2-201ENST00000492041 314 ntBASIC7.55□□□□□ -1.2
CUX1P39880 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC7.55□□□□□ -1.2
CUX1P39880 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
CUX1P39880 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
CUX1P39880 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC7.55□□□□□ -1.2
CUX1P39880 AP000648.2-201ENST00000624182 404 ntBASIC7.55□□□□□ -1.2
CUX1P39880 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC7.55□□□□□ -1.2
CUX1P39880 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC7.55□□□□□ -1.2
CUX1P39880 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC7.55□□□□□ -1.2
CUX1P39880 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC7.55□□□□□ -1.2
CUX1P39880 AL445487.1-201ENST00000415694 1580 ntBASIC7.55□□□□□ -1.2
CUX1P39880 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 AP001029.2-203ENST00000589795 4910 ntBASIC7.55□□□□□ -1.2
CUX1P39880 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
CUX1P39880 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 AC092376.2-201ENST00000622621 4116 ntBASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms