Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC022146.1-201ENST00000595307 847 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC100767.2-201ENST00000604840 693 ntBASIC5.61□□□□□ -1.51
MSX2P35548 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 AC100793.4-201ENST00000613683 429 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC121761.2-201ENST00000617300 689 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.61□□□□□ -1.51
MSX2P35548 AC124312.6-202ENST00000623624 418 ntBASIC5.61□□□□□ -1.51
MSX2P35548 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.61□□□□□ -1.51
MSX2P35548 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
MSX2P35548 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.61□□□□□ -1.51
MSX2P35548 MFSD8-239ENST00000641590 2479 ntBASIC5.6□□□□□ -1.51
MSX2P35548 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.6□□□□□ -1.51
MSX2P35548 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
MSX2P35548 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
MSX2P35548 TTC39DP-201ENST00000416781 1688 ntBASIC5.6□□□□□ -1.51
MSX2P35548 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX2P35548 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.6□□□□□ -1.51
MSX2P35548 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 RNU5E-4P-201ENST00000364931 120 ntBASIC5.6□□□□□ -1.51
MSX2P35548 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 RNU6-1200P-201ENST00000384162 107 ntBASIC5.6□□□□□ -1.51
MSX2P35548 RNU6-549P-201ENST00000384433 107 ntBASIC5.6□□□□□ -1.51
MSX2P35548 DEFB108C-201ENST00000400154 252 ntBASIC5.6□□□□□ -1.51
MSX2P35548 GGA1-205ENST00000405147 575 ntTSL 4 BASIC5.6□□□□□ -1.51
MSX2P35548 RNU6-920P-201ENST00000410926 92 ntBASIC5.6□□□□□ -1.51
MSX2P35548 PGBD4P8-201ENST00000412993 562 ntBASIC5.6□□□□□ -1.51
MSX2P35548 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 RPS26P13-201ENST00000419030 330 ntBASIC5.6□□□□□ -1.51
MSX2P35548 AC006065.1-201ENST00000422539 802 ntBASIC5.6□□□□□ -1.51
MSX2P35548 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC5.6□□□□□ -1.51
MSX2P35548 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 AL035458.1-201ENST00000433096 585 ntBASIC5.6□□□□□ -1.51
MSX2P35548 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 HMGB3P10-201ENST00000434734 572 ntBASIC5.6□□□□□ -1.51
MSX2P35548 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 RPS12P17-201ENST00000438591 377 ntBASIC5.6□□□□□ -1.51
MSX2P35548 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 GAPDHP37-201ENST00000442317 968 ntBASIC5.6□□□□□ -1.51
MSX2P35548 WDR82P2-201ENST00000444540 928 ntBASIC5.6□□□□□ -1.51
MSX2P35548 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX2P35548 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 OR52E7P-201ENST00000452394 933 ntBASIC5.6□□□□□ -1.51
MSX2P35548 AC104763.1-201ENST00000475274 360 ntBASIC5.6□□□□□ -1.51
MSX2P35548 RPS4XP17-201ENST00000479057 754 ntBASIC5.6□□□□□ -1.51
MSX2P35548 RPL5P33-201ENST00000487833 905 ntBASIC5.6□□□□□ -1.51
MSX2P35548 NREP-223ENST00000515855 801 ntTSL 4 BASIC5.6□□□□□ -1.51
MSX2P35548 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 NMNAT1P5-201ENST00000559657 841 ntBASIC5.6□□□□□ -1.51
MSX2P35548 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 AC087683.1-201ENST00000591187 441 ntBASIC5.6□□□□□ -1.51
MSX2P35548 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX2P35548 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX2P35548 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 AC024595.1-201ENST00000623088 387 ntBASIC5.6□□□□□ -1.51
MSX2P35548 AC005618.4-201ENST00000625053 554 ntBASIC5.6□□□□□ -1.51
MSX2P35548 MIR4278-201ENST00000636094 69 ntBASIC5.6□□□□□ -1.51
MSX2P35548 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX2P35548 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
MSX2P35548 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
MSX2P35548 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 AC000367.1-201ENST00000452711 1766 ntBASIC5.6□□□□□ -1.51
MSX2P35548 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX2P35548 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
MSX2P35548 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 AP001284.1-201ENST00000528393 2118 ntBASIC5.59□□□□□ -1.51
MSX2P35548 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 RBMY1HP-201ENST00000382759 1389 ntBASIC5.59□□□□□ -1.51
MSX2P35548 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 AC133552.1-201ENST00000569988 4007 ntBASIC5.59□□□□□ -1.51
MSX2P35548 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX2P35548 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX2P35548 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms