Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 BX842559.2-201ENST00000451418 605 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.59□□□□□ -1.67
COL6A3P12111 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A3P12111 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A3P12111 MIR4325-201ENST00000583049 90 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.59□□□□□ -1.67
COL6A3P12111 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 OR2L1P-202ENST00000641567 1023 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.67
COL6A3P12111 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 AC119744.1-201ENST00000454746 1715 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
COL6A3P12111 IL6STP1-201ENST00000346911 1020 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A3P12111 RNA5SP36-201ENST00000410197 133 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 AL691449.1-201ENST00000426570 421 ntBASIC4.59□□□□□ -1.67
COL6A3P12111 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A3P12111 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.59□□□□□ -1.67
COL6A3P12111 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC4.59□□□□□ -1.67
COL6A3P12111 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL6A3P12111 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
COL6A3P12111 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
COL6A3P12111 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC4.59□□□□□ -1.68
COL6A3P12111 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.59□□□□□ -1.68
COL6A3P12111 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL6A3P12111 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL6A3P12111 Y_RNA.638-201ENST00000459374 113 ntBASIC4.59□□□□□ -1.68
COL6A3P12111 AC104164.2-201ENST00000496953 495 ntBASIC4.59□□□□□ -1.68
COL6A3P12111 IMPA1P1-201ENST00000510718 842 ntBASIC4.59□□□□□ -1.68
COL6A3P12111 AL606490.9-201ENST00000603331 271 ntBASIC4.59□□□□□ -1.68
COL6A3P12111 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL6A3P12111 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.59□□□□□ -1.68
COL6A3P12111 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL6A3P12111 AL445363.3-201ENST00000623080 671 ntBASIC4.59□□□□□ -1.68
COL6A3P12111 SMG1P6-201ENST00000532337 2930 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
COL6A3P12111 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL6A3P12111 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 AL450992.3-201ENST00000413192 568 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A3P12111 AC037198.2-201ENST00000478845 733 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.58□□□□□ -1.68
COL6A3P12111 EIF4BP1-201ENST00000554881 351 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A3P12111 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A3P12111 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A3P12111 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 AC083899.1-201ENST00000454465 3819 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
COL6A3P12111 AC027228.2-201ENST00000567141 2154 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 RPL6P29-201ENST00000414863 865 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 NDUFB4P8-201ENST00000435351 367 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC4.58□□□□□ -1.68
COL6A3P12111 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.58□□□□□ -1.68
COL6A3P12111 uc_338.13-201ENST00000618243 179 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 AC010608.2-201ENST00000624830 470 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
COL6A3P12111 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.58□□□□□ -1.68
COL6A3P12111 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.58□□□□□ -1.68
COL6A3P12111 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 FRMD6-202ENST00000356218 4768 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 AC023632.6-201ENST00000624338 2177 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL6A3P12111 OR51H2P-202ENST00000641424 3046 ntBASIC4.58□□□□□ -1.68
COL6A3P12111 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 MIR331-201ENST00000362302 94 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 SNRPFP1-201ENST00000414761 252 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 RN7SL517P-201ENST00000462240 305 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A3P12111 AL121576.1-201ENST00000556055 276 ntBASIC4.57□□□□□ -1.68
COL6A3P12111 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.57□□□□□ -1.68
COL6A3P12111 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC4.57□□□□□ -1.68
COL6A3P12111 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
COL6A3P12111 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL6A3P12111 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms