Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR659-201ENST00000384963 97 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 RPL23AP59-201ENST00000399415 461 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AP000580.1-201ENST00000404439 358 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC093166.2-201ENST00000455969 1017 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 SNRPCP3-201ENST00000474888 476 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC073073.1-201ENST00000493920 463 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 CYCSP40-201ENST00000575927 294 ntBASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC88AQ3V6T2 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AL121950.1-201ENST00000624993 2077 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AC025574.1-201ENST00000554784 1653 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 OR14L1P-202ENST00000641545 3009 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 RPS26P8-201ENST00000393490 348 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AC140479.3-201ENST00000418944 1126 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 PHBP16-201ENST00000446318 950 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 MRPL35P2-201ENST00000448009 511 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 RN7SL517P-201ENST00000462240 305 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 BUD31P1-201ENST00000521828 359 ntBASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC88AQ3V6T2 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AC008033.1-201ENST00000216407 1162 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 RPS17P8-201ENST00000434525 335 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AL049830.4-201ENST00000555149 351 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 RN7SL703P-201ENST00000578485 302 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AL035461.2-201ENST00000619201 524 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AL450345.1-202ENST00000605741 3881 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 ATP5F1P2-201ENST00000398143 760 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 RPL21P65-201ENST00000406094 466 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AL451139.1-201ENST00000434718 346 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 RRM2P4-201ENST00000441721 562 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 HSFY6P-201ENST00000445573 403 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 AP000648.2-201ENST00000624182 404 ntBASIC5.75□□□□□ -1.49
CCDC88AQ3V6T2 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 RNU1-130P-201ENST00000363930 160 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 TMSB10P2-201ENST00000416049 131 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AC245028.2-201ENST00000458673 253 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AC091868.1-201ENST00000508746 304 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AL359219.2-201ENST00000555184 348 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 AC011477.5-201ENST00000586571 259 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 FRG1EP-201ENST00000634469 770 ntBASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms