Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
FOXA1P55317 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 AC112255.1-201ENST00000624070 2493 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA1P55317 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA1P55317 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA1P55317 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA1P55317 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXA1P55317 HCFC2P1-201ENST00000392864 1592 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA1P55317 RNU4-34P-201ENST00000410431 124 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA1P55317 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA1P55317 AC005154.2-201ENST00000438110 379 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.42□□□□□ -1.7
FOXA1P55317 NPM1P29-201ENST00000483112 803 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AC147055.3-201ENST00000510547 851 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 RN7SKP276-201ENST00000516242 268 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 SOX5P1-201ENST00000524155 1127 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.42□□□□□ -1.7
FOXA1P55317 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA1P55317 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.42□□□□□ -1.7
FOXA1P55317 AL390334.1-201ENST00000556395 450 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA1P55317 ADAD1P2-201ENST00000588476 646 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 OR7E18P-201ENST00000592589 702 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA1P55317 AC103792.1-201ENST00000603591 919 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AL031320.1-201ENST00000604177 357 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AC010201.1-201ENST00000605051 540 ntBASIC4.42□□□□□ -1.7
FOXA1P55317 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA1P55317 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXA1P55317 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA1P55317 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 AC010928.1-201ENST00000592477 1447 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 OR51C1P-202ENST00000641159 1444 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA1P55317 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA1P55317 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA1P55317 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 RN7SKP115-201ENST00000363177 317 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 RNU1-63P-201ENST00000383902 164 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AL109941.1-201ENST00000401925 229 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 RN7SKP267-201ENST00000410381 285 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 RN7SKP100-201ENST00000411258 284 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA1P55317 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 CEACAMP7-201ENST00000444105 496 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 RPS27AP15-201ENST00000447672 466 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA1P55317 AC026348.1-201ENST00000462549 1053 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 TSACC-207ENST00000470342 601 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 AC104763.1-201ENST00000475274 360 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 AC007016.1-201ENST00000512110 244 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 IGLV3-26-201ENST00000520756 302 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AC090151.1-201ENST00000520784 730 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA1P55317 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.41□□□□□ -1.7
FOXA1P55317 RN7SL52P-201ENST00000584271 284 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 HMGB2P1-201ENST00000591146 634 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 AL121890.2-201ENST00000617644 465 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AF117829.2-201ENST00000619538 361 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 MIR6853-201ENST00000619642 74 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
FOXA1P55317 AC091905.2-201ENST00000623143 306 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
FOXA1P55317 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
FOXA1P55317 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC4.41□□□□□ -1.7
FOXA1P55317 KARSP3-201ENST00000571212 1504 ntBASIC4.41□□□□□ -1.7
FOXA1P55317 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA1P55317 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
FOXA1P55317 RBPJP2-201ENST00000618187 1444 ntBASIC4.4□□□□□ -1.7
FOXA1P55317 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
FOXA1P55317 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
FOXA1P55317 AC021146.4-201ENST00000309229 279 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
FOXA1P55317 RN7SKP149-201ENST00000363008 344 ntBASIC4.4□□□□□ -1.71
FOXA1P55317 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.4□□□□□ -1.71
FOXA1P55317 ATG4AP1-201ENST00000416893 538 ntBASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms