Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC093166.2-201ENST00000455969 1017 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC7.62□□□□□ -1.19
CUX1P39880 AP002812.1-201ENST00000495378 474 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AK4P6-201ENST00000505168 528 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AC105031.1-201ENST00000518550 476 ntBASIC7.62□□□□□ -1.19
CUX1P39880 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
CUX1P39880 IPO5P1-202ENST00000600039 287 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC7.62□□□□□ -1.19
CUX1P39880 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
CUX1P39880 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC7.62□□□□□ -1.19
CUX1P39880 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CUX1P39880 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC7.62□□□□□ -1.19
CUX1P39880 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
CUX1P39880 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.62□□□□□ -1.19
CUX1P39880 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CUX1P39880 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC7.62□□□□□ -1.19
CUX1P39880 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC7.62□□□□□ -1.19
CUX1P39880 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC7.62□□□□□ -1.19
CUX1P39880 OR8R1P-201ENST00000543943 764 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC7.62□□□□□ -1.19
CUX1P39880 MIR4444-1-201ENST00000581696 74 ntBASIC7.62□□□□□ -1.19
CUX1P39880 MIR4444-2-201ENST00000584390 74 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AC091979.2-201ENST00000607514 214 ntBASIC7.62□□□□□ -1.19
CUX1P39880 MIR6867-201ENST00000610636 67 ntBASIC7.62□□□□□ -1.19
CUX1P39880 CYP1D1P-201ENST00000416662 1433 ntBASIC7.62□□□□□ -1.19
CUX1P39880 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
CUX1P39880 MAPK10-328ENST00000641553 4009 ntBASIC7.61□□□□□ -1.19
CUX1P39880 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CUX1P39880 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CUX1P39880 AC022417.1-201ENST00000624768 1303 ntBASIC7.61□□□□□ -1.19
CUX1P39880 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CUX1P39880 AL158163.1-201ENST00000603915 1649 ntBASIC7.61□□□□□ -1.19
CUX1P39880 RPL17P50-201ENST00000396131 546 ntBASIC7.61□□□□□ -1.19
CUX1P39880 RNA5SP44-201ENST00000410446 133 ntBASIC7.61□□□□□ -1.19
CUX1P39880 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CUX1P39880 CKS1BP6-201ENST00000424932 240 ntBASIC7.61□□□□□ -1.19
CUX1P39880 NPM1P26-201ENST00000426339 738 ntBASIC7.61□□□□□ -1.19
CUX1P39880 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC7.61□□□□□ -1.19
CUX1P39880 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC7.61□□□□□ -1.19
CUX1P39880 snoU13.22-201ENST00000459428 104 ntBASIC7.61□□□□□ -1.19
CUX1P39880 AC008958.1-201ENST00000511047 682 ntBASIC7.61□□□□□ -1.19
CUX1P39880 AC108064.1-201ENST00000513791 460 ntBASIC7.61□□□□□ -1.19
CUX1P39880 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC7.61□□□□□ -1.19
CUX1P39880 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC7.61□□□□□ -1.19
CUX1P39880 AC006065.6-201ENST00000625201 545 ntBASIC7.61□□□□□ -1.19
CUX1P39880 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
CUX1P39880 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CUX1P39880 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC7.6□□□□□ -1.19
CUX1P39880 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 AL450345.1-202ENST00000605741 3881 ntBASIC7.6□□□□□ -1.19
CUX1P39880 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC7.6□□□□□ -1.19
CUX1P39880 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC7.6□□□□□ -1.19
CUX1P39880 CEACAMP8-201ENST00000413902 580 ntBASIC7.6□□□□□ -1.19
CUX1P39880 AC013429.2-201ENST00000418798 781 ntBASIC7.6□□□□□ -1.19
CUX1P39880 RHEBP2-201ENST00000450289 600 ntBASIC7.6□□□□□ -1.19
CUX1P39880 RPL35P6-201ENST00000490024 372 ntBASIC7.6□□□□□ -1.19
CUX1P39880 RPS27AP13-201ENST00000498403 237 ntBASIC7.6□□□□□ -1.19
CUX1P39880 MYL12BP2-201ENST00000503948 512 ntBASIC7.6□□□□□ -1.19
CUX1P39880 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC7.6□□□□□ -1.19
CUX1P39880 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC7.6□□□□□ -1.19
CUX1P39880 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC7.6□□□□□ -1.19
CUX1P39880 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 CYCSP40-201ENST00000575927 294 ntBASIC7.6□□□□□ -1.19
CUX1P39880 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC7.6□□□□□ -1.19
CUX1P39880 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC7.6□□□□□ -1.19
CUX1P39880 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 ARHGAP42P3-201ENST00000443989 2508 ntBASIC7.6□□□□□ -1.19
CUX1P39880 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC7.6□□□□□ -1.19
CUX1P39880 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CUX1P39880 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CUX1P39880 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 MIR331-201ENST00000362302 94 ntBASIC7.59□□□□□ -1.19
CUX1P39880 RNA5SP283-201ENST00000365604 119 ntBASIC7.59□□□□□ -1.19
CUX1P39880 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CUX1P39880 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 CYCSP19-201ENST00000411715 316 ntBASIC7.59□□□□□ -1.19
CUX1P39880 YY1P1-201ENST00000427625 668 ntBASIC7.59□□□□□ -1.19
CUX1P39880 RPL35AP21-201ENST00000437667 333 ntBASIC7.59□□□□□ -1.19
CUX1P39880 CR383656.1-201ENST00000484916 377 ntBASIC7.59□□□□□ -1.19
CUX1P39880 SNORA67.7-201ENST00000516664 135 ntBASIC7.59□□□□□ -1.19
CUX1P39880 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC7.59□□□□□ -1.19
CUX1P39880 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC7.59□□□□□ -1.19
CUX1P39880 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.59□□□□□ -1.19
CUX1P39880 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC7.59□□□□□ -1.19
CUX1P39880 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC7.59□□□□□ -1.19
CUX1P39880 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CUX1P39880 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.2
CUX1P39880 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
CUX1P39880 RN7SKP33-201ENST00000410942 340 ntBASIC7.58□□□□□ -1.2
CUX1P39880 EIF4A1P3-201ENST00000411521 244 ntBASIC7.58□□□□□ -1.2
CUX1P39880 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC7.58□□□□□ -1.2
CUX1P39880 AL451062.2-201ENST00000427515 271 ntBASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms