Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.38□□□□□ -1.39
COL6A1P12109 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL6A1P12109 RNU6-796P-201ENST00000391086 107 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 Y_RNA.619-201ENST00000410951 90 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 MTND4LP17-201ENST00000414607 293 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 EXTL2P1-201ENST00000446218 416 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AL589880.1-201ENST00000448271 287 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AL627224.1-201ENST00000448334 444 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 RPS29P22-201ENST00000472363 168 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC079080.1-201ENST00000479841 822 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 AC011037.1-201ENST00000483964 558 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 RPS12P31-201ENST00000491419 398 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 MTCYBP37-201ENST00000510642 1133 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 GSTP1P1-201ENST00000548078 319 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 SETP1-201ENST00000556014 845 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 MIR4301-201ENST00000577203 66 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 DPRXP5-201ENST00000604662 539 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC105129.3-201ENST00000605455 485 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.38□□□□□ -1.39
COL6A1P12109 AC007671.2-201ENST00000637344 619 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 HSPA8P17-201ENST00000427029 1382 ntBASIC6.38□□□□□ -1.39
COL6A1P12109 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.38□□□□□ -1.39
COL6A1P12109 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL6A1P12109 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL6A1P12109 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL6A1P12109 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 MTND5P11-201ENST00000511037 1812 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 MT-TP-201ENST00000387461 68 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL6A1P12109 RNU6-1242P-201ENST00000391052 103 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 OR8V1P-201ENST00000395193 873 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 RNU4-72P-201ENST00000410754 173 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL445183.3-201ENST00000414168 502 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL008987.1-201ENST00000415528 237 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
COL6A1P12109 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 BX119904.1-201ENST00000432026 348 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL138878.2-201ENST00000440581 1241 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC023141.8-201ENST00000442554 208 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC073387.1-201ENST00000453261 709 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL035090.1-201ENST00000454835 332 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 DAP3-209ENST00000465375 729 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 AC073610.1-201ENST00000489971 396 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC093890.1-201ENST00000502554 540 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 MTCO3P7-201ENST00000510008 774 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 HMGB1P1-201ENST00000522557 636 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms