Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 CR383658.2-201ENST00000547576 1525 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC093225.1-201ENST00000506867 1408 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC004520.1-201ENST00000608362 1413 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXA3O43365 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXA3O43365 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 TMSB4XP8-201ENST00000402089 135 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 MIR1284-201ENST00000408337 120 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 RN7SKP281-201ENST00000410472 352 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 TMSB4XP6-201ENST00000415187 135 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 TMSB4XP1-201ENST00000424567 135 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 RBMX2P4-201ENST00000441256 376 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC093392.2-201ENST00000450682 337 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 ARPC3P2-201ENST00000457786 533 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC010307.1-201ENST00000467206 836 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC022206.1-201ENST00000495947 347 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC138853.1-201ENST00000503549 823 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC008802.1-201ENST00000519121 791 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AP001189.2-201ENST00000527320 189 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC5.18□□□□□ -1.58
HOXA3O43365 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC092375.1-201ENST00000550410 637 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 MIR4301-201ENST00000577203 66 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC022884.3-201ENST00000579571 248 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC090312.2-201ENST00000582687 378 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC020914.6-201ENST00000594327 272 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC012065.4-201ENST00000602445 679 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AL390816.3-201ENST00000604527 1066 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC116651.1-201ENST00000609724 556 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AC055764.2-201ENST00000610089 670 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 AL136097.3-201ENST00000611097 505 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.18□□□□□ -1.58
HOXA3O43365 AL008636.1-201ENST00000625038 1018 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 AC099654.13-201ENST00000639774 207 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 RNF6P1-201ENST00000444889 1784 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 PABPC1P9-201ENST00000426076 1612 ntBASIC5.18□□□□□ -1.58
HOXA3O43365 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXA3O43365 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HOXA3O43365 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms