Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RNU6-1062P-201ENST00000383908 107 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 Y_RNA.455-201ENST00000384230 98 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 Y_RNA.482-201ENST00000384377 111 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 MIR454-201ENST00000390180 115 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RNU6-903P-201ENST00000391270 109 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL139397.2-201ENST00000404529 772 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL136131.1-201ENST00000406079 803 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RNU6-954P-201ENST00000411355 107 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RPL7P10-201ENST00000417407 739 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RBMY2GP-201ENST00000418671 1034 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 PRPS1P2-201ENST00000430496 937 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 GAPDHP23-201ENST00000444823 993 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RPL21P23-201ENST00000446654 460 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL161722.1-201ENST00000446972 1032 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL133215.1-201ENST00000447344 342 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 C15orf40-202ENST00000451195 518 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RN7SL508P-201ENST00000464472 303 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RN7SL272P-201ENST00000487762 289 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 ALDH7A1P3-201ENST00000492517 345 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RPS27P27-201ENST00000498779 255 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 TRBVA-201ENST00000498804 316 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC138866.1-201ENST00000514522 497 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 Y_RNA.668-201ENST00000516233 93 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RNA5SP454-201ENST00000517231 127 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC02365-203ENST00000522554 802 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AP000907.2-201ENST00000530827 353 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AP000911.4-201ENST00000532272 516 ntTSL 4 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC136944.5-201ENST00000573021 151 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RN7SL376P-201ENST00000578594 264 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 MIR4682-201ENST00000580643 80 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC090699.1-201ENST00000586264 321 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 GLUD1P4-201ENST00000590914 418 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC013244.1-201ENST00000604279 193 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 RN7SL3-201ENST00000610674 299 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC012409.4-201ENST00000612923 249 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC245028.3-201ENST00000618197 285 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 CDRT1-208ENST00000630868 794 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 AC026950.2-201ENST00000633456 470 ntTSL 3 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RHOXF1P2-201ENST00000635431 502 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 MIR3120-201ENST00000636555 81 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 SND1-IT1-201ENST00000623342 2481 ntBASIC7.1□□□□□ -1.27
USB1Q9BQ65 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RHOXF1-AS1-201ENST00000553843 2102 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 MASP1-205ENST00000392472 3900 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USB1Q9BQ65 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 FRMPD2-213ENST00000636244 4194 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
USB1Q9BQ65 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 MAPK10-252ENST00000640970 2620 ntTSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC7.1□□□□□ -1.27
USB1Q9BQ65 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 GANC-206ENST00000566442 2512 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 XIRP2-206ENST00000409728 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
USB1Q9BQ65 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 AMELY-202ENST00000383036 621 ntTSL 5 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 RNVU1-15-201ENST00000384476 165 ntBASIC7.09□□□□□ -1.27
USB1Q9BQ65 RNU6-310P-201ENST00000384655 107 ntBASIC7.09□□□□□ -1.27
USB1Q9BQ65 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC7.09□□□□□ -1.27
USB1Q9BQ65 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms