Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.01□□□□□ -1.61
COL4A4P53420 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
COL4A4P53420 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 AL121657.1-201ENST00000327215 531 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.01□□□□□ -1.61
COL4A4P53420 AP000580.1-201ENST00000404439 358 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 AL356387.2-201ENST00000422272 243 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 SERPINA7P1-201ENST00000443077 631 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 RN7SL558P-201ENST00000497468 299 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 SNORA31.9-201ENST00000516429 84 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 Y_RNA.719-201ENST00000517156 106 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.01□□□□□ -1.61
COL4A4P53420 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.01□□□□□ -1.61
COL4A4P53420 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC5.01□□□□□ -1.61
COL4A4P53420 AP005901.4-201ENST00000577336 569 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.01□□□□□ -1.61
COL4A4P53420 AL445567.2-201ENST00000618935 498 ntBASIC5.01□□□□□ -1.61
COL4A4P53420 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.01□□□□□ -1.61
COL4A4P53420 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL4A4P53420 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
COL4A4P53420 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
COL4A4P53420 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5□□□□□ -1.61
COL4A4P53420 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5□□□□□ -1.61
COL4A4P53420 EIF4HP2-201ENST00000424380 563 ntBASIC5□□□□□ -1.61
COL4A4P53420 HMGN2P27-201ENST00000427352 270 ntBASIC5□□□□□ -1.61
COL4A4P53420 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5□□□□□ -1.61
COL4A4P53420 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5□□□□□ -1.61
COL4A4P53420 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 AK4P6-201ENST00000505168 528 ntBASIC5□□□□□ -1.61
COL4A4P53420 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 AC015912.2-201ENST00000571053 181 ntBASIC5□□□□□ -1.61
COL4A4P53420 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 UGT2B26P-201ENST00000508672 1613 ntBASIC5□□□□□ -1.61
COL4A4P53420 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL4A4P53420 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5□□□□□ -1.61
COL4A4P53420 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5□□□□□ -1.61
COL4A4P53420 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL4A4P53420 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 SNORD46.1-201ENST00000364139 104 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 RPS26P8-201ENST00000393490 348 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 OR1F12-201ENST00000402365 945 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AL139039.2-201ENST00000407436 479 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 RPS12P10-201ENST00000427031 377 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.99□□□□□ -1.61
COL4A4P53420 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.99□□□□□ -1.61
COL4A4P53420 SAP18P1-201ENST00000512058 390 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.99□□□□□ -1.61
COL4A4P53420 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.99□□□□□ -1.61
COL4A4P53420 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 AC093249.4-201ENST00000564755 259 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AC022916.3-201ENST00000592961 742 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 OR7A19P-201ENST00000608051 733 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
COL4A4P53420 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.99□□□□□ -1.61
COL4A4P53420 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 ZNF137P-201ENST00000456718 1920 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AC005261.4-201ENST00000600047 1385 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 SPRR2C-201ENST00000290702 219 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL4A4P53420 ATP5F1P2-201ENST00000398143 760 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 CEACAMP8-201ENST00000413902 580 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AL358176.3-201ENST00000420757 454 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 FTH1P16-201ENST00000435241 552 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.99□□□□□ -1.61
COL4A4P53420 MTCO1P49-201ENST00000523429 802 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 OR8A2P-201ENST00000528631 952 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.99□□□□□ -1.61
COL4A4P53420 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.99□□□□□ -1.61
COL4A4P53420 AL121834.1-201ENST00000572284 509 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC4.99□□□□□ -1.61
COL4A4P53420 AC243756.2-201ENST00000618406 463 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 CYP1D1P-201ENST00000416662 1433 ntBASIC4.99□□□□□ -1.61
COL4A4P53420 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.98□□□□□ -1.61
COL4A4P53420 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.98□□□□□ -1.61
COL4A4P53420 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
COL4A4P53420 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.98□□□□□ -1.61
COL4A4P53420 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 AC135352.1-201ENST00000506173 1418 ntBASIC4.98□□□□□ -1.61
COL4A4P53420 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL4A4P53420 RNA5SP387-201ENST00000364226 106 ntBASIC4.98□□□□□ -1.61
COL4A4P53420 NDUFB4P12-201ENST00000513465 390 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms