Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CDX1P47902 AC009229.4-201ENST00000623854 1947 ntBASIC4.45□□□□□ -1.7
CDX1P47902 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 AL159987.1-201ENST00000347911 293 ntBASIC4.45□□□□□ -1.7
CDX1P47902 RNA5SP27-201ENST00000363839 119 ntBASIC4.45□□□□□ -1.7
CDX1P47902 SNORD56.4-201ENST00000363883 71 ntBASIC4.45□□□□□ -1.7
CDX1P47902 GCNT6-201ENST00000379591 934 ntBASIC4.45□□□□□ -1.7
CDX1P47902 RNU6-98P-201ENST00000384173 107 ntBASIC4.45□□□□□ -1.7
CDX1P47902 U3.28-201ENST00000391249 210 ntBASIC4.45□□□□□ -1.7
CDX1P47902 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 RPL21P67-201ENST00000402896 478 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AL357752.1-201ENST00000412817 349 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 MTND4P11-201ENST00000417020 1058 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 RNGTTP1-201ENST00000420965 728 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC009965.2-201ENST00000425328 970 ntBASIC4.45□□□□□ -1.7
CDX1P47902 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CDX1P47902 NPM1P24-201ENST00000428039 894 ntBASIC4.45□□□□□ -1.7
CDX1P47902 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.45□□□□□ -1.7
CDX1P47902 ARL5AP2-201ENST00000444698 533 ntBASIC4.45□□□□□ -1.7
CDX1P47902 TPTE2P6-202ENST00000445572 1007 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AL450996.1-201ENST00000445574 1202 ntBASIC4.45□□□□□ -1.7
CDX1P47902 OR7E116P-201ENST00000448529 957 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 MEMO1P4-201ENST00000453590 386 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC018638.3-201ENST00000461273 132 ntBASIC4.45□□□□□ -1.7
CDX1P47902 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 AC008379.1-201ENST00000463655 464 ntBASIC4.45□□□□□ -1.7
CDX1P47902 RPS23P2-201ENST00000463671 415 ntBASIC4.45□□□□□ -1.7
CDX1P47902 RPS23P6-201ENST00000466136 431 ntBASIC4.45□□□□□ -1.7
CDX1P47902 OARD1-211ENST00000480585 829 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 RPL32P33-201ENST00000487023 394 ntBASIC4.45□□□□□ -1.7
CDX1P47902 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 ARL4AP1-201ENST00000503220 705 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 AC105384.2-201ENST00000508433 640 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC138938.1-201ENST00000515431 782 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 NRBF2P4-201ENST00000520874 850 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 AC107918.3-201ENST00000533272 382 ntBASIC4.45□□□□□ -1.7
CDX1P47902 DPPA2P4-201ENST00000563717 878 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 RN7SL290P-201ENST00000578661 300 ntBASIC4.45□□□□□ -1.7
CDX1P47902 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.45□□□□□ -1.7
CDX1P47902 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 AC063977.5-201ENST00000601044 974 ntBASIC4.45□□□□□ -1.7
CDX1P47902 ABI1P1-201ENST00000603375 1120 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 AL139124.1-201ENST00000609123 421 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC243654.2-201ENST00000612843 443 ntBASIC4.45□□□□□ -1.7
CDX1P47902 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.45□□□□□ -1.7
CDX1P47902 MIR6729-201ENST00000618194 65 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.45□□□□□ -1.7
CDX1P47902 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.45□□□□□ -1.7
CDX1P47902 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CDX1P47902 AC100778.3-201ENST00000580060 1750 ntBASIC4.45□□□□□ -1.7
CDX1P47902 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
CDX1P47902 AL136520.1-201ENST00000600311 1322 ntBASIC4.45□□□□□ -1.7
CDX1P47902 MFSD8-213ENST00000641134 1327 ntBASIC4.45□□□□□ -1.7
CDX1P47902 AC126323.6-202ENST00000568092 3511 ntBASIC4.45□□□□□ -1.7
CDX1P47902 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CDX1P47902 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.44□□□□□ -1.7
CDX1P47902 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.44□□□□□ -1.7
CDX1P47902 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.44□□□□□ -1.7
CDX1P47902 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.44□□□□□ -1.7
CDX1P47902 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.44□□□□□ -1.7
CDX1P47902 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.44□□□□□ -1.7
CDX1P47902 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CDX1P47902 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
CDX1P47902 RNA5SP242-201ENST00000364171 118 ntBASIC4.44□□□□□ -1.7
CDX1P47902 AC007618.1-201ENST00000366455 732 ntBASIC4.44□□□□□ -1.7
CDX1P47902 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CDX1P47902 RNU1-136P-201ENST00000384181 164 ntBASIC4.44□□□□□ -1.7
CDX1P47902 VDAC2P1-201ENST00000399358 958 ntBASIC4.44□□□□□ -1.7
CDX1P47902 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.44□□□□□ -1.7
CDX1P47902 GAPDHP42-201ENST00000406848 981 ntBASIC4.44□□□□□ -1.7
CDX1P47902 GSTM3P2-201ENST00000412746 530 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms