Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC006509.1-201ENST00000420788 634 ntBASIC5.63□□□□□ -1.51
MSX2P35548 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 MRPS10P2-201ENST00000431226 381 ntBASIC5.63□□□□□ -1.51
MSX2P35548 PSMD8P1-201ENST00000436275 769 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC092641.1-201ENST00000440229 772 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 MED28P3-201ENST00000444288 531 ntBASIC5.63□□□□□ -1.51
MSX2P35548 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 HIGD1AP16-201ENST00000450986 258 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.63□□□□□ -1.51
MSX2P35548 RNU7-140P-201ENST00000459546 60 ntBASIC5.63□□□□□ -1.51
MSX2P35548 RPL38P3-201ENST00000484463 213 ntBASIC5.63□□□□□ -1.51
MSX2P35548 RPL34P33-201ENST00000486062 334 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC084024.2-201ENST00000503480 791 ntBASIC5.63□□□□□ -1.51
MSX2P35548 DSTNP2-201ENST00000504533 515 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC026782.2-201ENST00000510845 636 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC090958.1-201ENST00000511122 351 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.63□□□□□ -1.51
MSX2P35548 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.63□□□□□ -1.51
MSX2P35548 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX2P35548 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX2P35548 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 AC011260.1-201ENST00000578420 472 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.63□□□□□ -1.51
MSX2P35548 AC006115.2-201ENST00000596823 202 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AL513327.3-201ENST00000602618 469 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC079089.3-201ENST00000603094 673 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC019131.2-201ENST00000609071 870 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC015712.7-201ENST00000615211 635 ntBASIC5.63□□□□□ -1.51
MSX2P35548 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC073569.3-201ENST00000619055 682 ntBASIC5.63□□□□□ -1.51
MSX2P35548 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 AC109454.4-201ENST00000623411 649 ntBASIC5.63□□□□□ -1.51
MSX2P35548 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 ZNF663P-202ENST00000641770 1131 ntBASIC5.63□□□□□ -1.51
MSX2P35548 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.63□□□□□ -1.51
MSX2P35548 CAP1P2-201ENST00000417455 1409 ntBASIC5.63□□□□□ -1.51
MSX2P35548 AC004158.1-201ENST00000564508 4319 ntBASIC5.63□□□□□ -1.51
MSX2P35548 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
MSX2P35548 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
MSX2P35548 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX2P35548 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.63□□□□□ -1.51
MSX2P35548 AC087359.1-201ENST00000508335 1740 ntBASIC5.62□□□□□ -1.51
MSX2P35548 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 AC026523.2-201ENST00000625039 7739 ntBASIC5.62□□□□□ -1.51
MSX2P35548 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 AP001029.2-203ENST00000589795 4910 ntBASIC5.62□□□□□ -1.51
MSX2P35548 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.62□□□□□ -1.51
MSX2P35548 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 MIR133A2-201ENST00000347538 102 ntBASIC5.62□□□□□ -1.51
MSX2P35548 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 RN7SKP185-201ENST00000362813 326 ntBASIC5.62□□□□□ -1.51
MSX2P35548 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
MSX2P35548 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 AL079342.2-201ENST00000403367 482 ntBASIC5.62□□□□□ -1.51
MSX2P35548 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
MSX2P35548 USP9YP33-201ENST00000412220 421 ntBASIC5.62□□□□□ -1.51
MSX2P35548 TAF13P2-201ENST00000416876 286 ntBASIC5.62□□□□□ -1.51
MSX2P35548 RPL21P50-201ENST00000417698 477 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AK4P4-201ENST00000419465 646 ntBASIC5.62□□□□□ -1.51
MSX2P35548 CRIP1P1-201ENST00000427567 185 ntBASIC5.62□□□□□ -1.51
MSX2P35548 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.62□□□□□ -1.51
MSX2P35548 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.62□□□□□ -1.51
MSX2P35548 AC096632.2-201ENST00000438139 1239 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AL591503.2-201ENST00000442314 1005 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.62□□□□□ -1.51
MSX2P35548 TPMTP4-201ENST00000450749 678 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.62□□□□□ -1.51
MSX2P35548 RPL35AP19-201ENST00000469425 329 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AL024509.2-201ENST00000493462 493 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC009567.2-201ENST00000502989 349 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC092349.1-201ENST00000504903 310 ntBASIC5.62□□□□□ -1.51
MSX2P35548 CBX3P3-201ENST00000508108 532 ntBASIC5.62□□□□□ -1.51
MSX2P35548 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms