Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC6.37□□□□□ -1.39
COL8A1P27658 NDUFA3P4-201ENST00000560814 250 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 AL158151.4-201ENST00000600965 507 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 AC016727.2-201ENST00000603988 621 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 BNIP3P4-201ENST00000604946 565 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AL161734.1-201ENST00000609720 557 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC083806.3-201ENST00000614016 455 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 FAM157A-202ENST00000615155 405 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC079597.1-201ENST00000624306 508 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 AC024023.1-201ENST00000624530 922 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 HCG18-244ENST00000602516 2890 ntBASIC6.37□□□□□ -1.39
COL8A1P27658 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 FLJ21408-201ENST00000499939 2594 ntTSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC6.37□□□□□ -1.39
COL8A1P27658 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 LINC02150-201ENST00000513157 2120 ntTSL 5 BASIC6.37□□□□□ -1.39
COL8A1P27658 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL8A1P27658 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL8A1P27658 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC095038.1-201ENST00000429248 1591 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 OR9K1P-201ENST00000326513 941 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 RN7SKP78-201ENST00000364711 318 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 RN7SKP191-201ENST00000364713 306 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 RNA5SP152-201ENST00000365184 110 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 RNA5SP176-201ENST00000390956 110 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 AL451054.2-201ENST00000420896 202 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC007562.1-201ENST00000421819 517 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 USP24P1-201ENST00000433802 779 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC015983.1-201ENST00000441577 373 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 RPL23AP16-201ENST00000441715 421 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC023512.1-201ENST00000444513 499 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 COX6CP18-201ENST00000448769 222 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC108463.2-201ENST00000451230 412 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AC016687.1-201ENST00000482574 353 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 MTCO1P29-201ENST00000496868 288 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC112204.1-201ENST00000502591 103 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 GAPDHP56-201ENST00000506031 988 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC079140.5-201ENST00000507882 310 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 PTP4A1P6-201ENST00000531034 478 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC053481.3-201ENST00000577881 843 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 MIR4470-201ENST00000583453 72 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC026898.1-201ENST00000586404 571 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 HMGN1P30-201ENST00000589286 268 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AC016629.2-201ENST00000597341 199 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 CKS1BP3-201ENST00000600888 237 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 AC100812.1-201ENST00000607622 580 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 AC062037.2-201ENST00000610137 73 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 AL732618.1-201ENST00000623251 301 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 SNORA43.5-201ENST00000631270 138 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 U6.107-201ENST00000637108 79 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 DPH6-202ENST00000440392 3648 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms