Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RAD23BP1-201ENST00000421404 1227 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC046176.1-201ENST00000435260 1170 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AL450023.3-201ENST00000440592 271 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC010618.1-201ENST00000469924 477 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC093840.1-201ENST00000511599 336 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC026688.1-201ENST00000520639 1168 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 NSF-206ENST00000575068 2667 ntTSL 2 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 FABP7P1-201ENST00000424004 391 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AJ239321.1-201ENST00000424255 564 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC020593.1-201ENST00000507399 299 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC068831.4-201ENST00000556118 109 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC106785.1-201ENST00000565935 262 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC093765.1-201ENST00000603758 881 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC021422.1-201ENST00000621212 473 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AL161637.1-201ENST00000622380 412 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC004232.3-201ENST00000622977 525 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 NRK-204ENST00000540278 1687 ntTSL 2 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 SMG1P7-201ENST00000565246 2704 ntBASIC9.29□□□□□ -0.92
SHROOM4Q9ULL8 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RNA5SP453-201ENST00000362503 119 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RPS21P8-201ENST00000413365 247 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RAB9AP5-201ENST00000437794 597 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RAB9AP2-201ENST00000443911 597 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RPS5P7-201ENST00000456664 608 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 NIFKP7-201ENST00000503365 834 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 SNORA70.17-201ENST00000516449 133 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC107068.1-201ENST00000563286 4218 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RAB9AP4-201ENST00000415230 609 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RCC2P2-201ENST00000422174 918 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC011276.1-201ENST00000469688 323 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 MTCYBP13-201ENST00000578634 1093 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 AC016911.1-201ENST00000613297 452 ntBASIC9.28□□□□□ -0.92
SHROOM4Q9ULL8 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
SHROOM4Q9ULL8 DDX18P6-201ENST00000450119 1997 ntBASIC9.27□□□□□ -0.92
SHROOM4Q9ULL8 POMP-202ENST00000460403 1428 ntTSL 3 BASIC9.27□□□□□ -0.92
SHROOM4Q9ULL8 ECM1P2-201ENST00000503354 1577 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 OR6C69P-201ENST00000394268 893 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 GLS-203ENST00000409215 632 ntTSL 4 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 GPS2P1-201ENST00000411761 986 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AL451062.2-201ENST00000427515 271 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 NPM1P6-201ENST00000521088 871 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AC007224.1-201ENST00000564410 144 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AC026367.3-201ENST00000619032 590 ntBASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
SHROOM4Q9ULL8 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC9.26□□□□□ -0.93
SHROOM4Q9ULL8 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC9.26□□□□□ -0.93
SHROOM4Q9ULL8 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC9.26□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms