Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RNU6-796P-201ENST00000391086 107 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC233289.1-201ENST00000403700 508 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 OR6E1P-201ENST00000414424 923 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 RNF10P1-201ENST00000418589 369 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 KRR1P1-201ENST00000419430 803 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 OSTCP5-201ENST00000425293 453 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC092651.1-201ENST00000426110 312 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 TXNL1P1-201ENST00000429528 554 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 RPS27P18-201ENST00000431701 247 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 FMO7P-201ENST00000436045 768 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 MTCYBP29-201ENST00000436327 1006 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 KRT8P51-201ENST00000438938 274 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL450263.2-201ENST00000439400 589 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 SYT14P1-201ENST00000481459 721 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ATP5LP3-201ENST00000514223 304 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 RBM22P12-201ENST00000567098 1255 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 MIR4311-201ENST00000580794 100 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 CBX3P2-202ENST00000583365 535 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC069304.3-201ENST00000603938 1084 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 SMG1P7-201ENST00000565246 2704 ntBASIC5.69□□□□□ -1.5
DKK3Q9UBP4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.69□□□□□ -1.5
DKK3Q9UBP4 AC132825.1-201ENST00000463573 2247 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL031595.2-201ENST00000624215 19071 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC027228.2-201ENST00000567141 2154 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 SNORA58B-201ENST00000364259 136 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 GSTA12P-201ENST00000402398 508 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 RPS6P23-201ENST00000413224 722 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 LIPT1P1-201ENST00000415870 1186 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL513325.1-201ENST00000417716 1034 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 GLUD1P9-201ENST00000420997 1173 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 DEFB130D-201ENST00000426866 237 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 USP9YP11-201ENST00000427537 717 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL627308.1-201ENST00000435693 821 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC006335.2-201ENST00000437993 330 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL450023.1-201ENST00000450868 751 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC134050.1-201ENST00000495088 933 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 HPRT1P1-201ENST00000509498 657 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC117522.2-201ENST00000510049 657 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC133963.2-201ENST00000513686 578 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 OR7E128P-201ENST00000532736 1024 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 SNORD39.2-201ENST00000579995 76 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 PCNAP1-202ENST00000595299 752 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AL049844.2-201ENST00000604280 628 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC073387.2-201ENST00000604797 784 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC073137.1-201ENST00000605636 634 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.68□□□□□ -1.5
DKK3Q9UBP4 RMST_5.1-201ENST00000618704 126 ntBASIC5.68□□□□□ -1.5
DKK3Q9UBP4 AP001005.3-201ENST00000622049 129 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms