Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 RNU1-94P-201ENST00000362627 173 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 RNA5SP455-201ENST00000365190 119 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 RNU1-106P-201ENST00000384382 164 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 MIR765-201ENST00000390226 114 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 DHFRP5-201ENST00000406944 564 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 RN7SKP16-201ENST00000410180 299 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 RNU4-34P-201ENST00000410431 124 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 DDX39BP1-205ENST00000422507 192 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 GTF2IP2-201ENST00000424290 697 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 RPL7AP61-201ENST00000443410 636 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 CYCSP34-201ENST00000458172 304 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC110749.1-201ENST00000462007 357 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 RPL7AP28-201ENST00000464513 571 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC004815.1-201ENST00000484185 331 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 RN7SL244P-201ENST00000493405 297 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC020915.5-201ENST00000596836 964 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC097505.1-201ENST00000610199 565 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC009163.6-201ENST00000612367 342 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 MIR8069-1-201ENST00000616627 86 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AL590410.1-201ENST00000617925 333 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 MIR8069-2-201ENST00000621412 86 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC079298.2-201ENST00000623885 459 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC087190.4-201ENST00000574616 8334 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 AC109780.1-201ENST00000451768 1344 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 GAPDHP15-201ENST00000398586 975 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 SNORA77-201ENST00000408716 125 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 DPPA2P3-201ENST00000411853 655 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 TXNP5-201ENST00000441043 315 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 RPL34P20-201ENST00000442771 351 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 RSL24D1P2-201ENST00000445584 366 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 AL354714.3-201ENST00000447284 493 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC109462.1-201ENST00000491087 368 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 ATG10-AS1-201ENST00000504846 648 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC004980.4-201ENST00000513375 203 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC104118.1-201ENST00000607625 1589 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC016769.4-201ENST00000616893 535 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.42□□□□□ -1.7
SKA3Q8IX90 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SKA3Q8IX90 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
SKA3Q8IX90 AC245100.2-201ENST00000454544 1679 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 AC112255.1-201ENST00000624070 2493 ntBASIC4.41□□□□□ -1.7
SKA3Q8IX90 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms