Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC3.55□□□□□ -1.84
FOXA3P55318 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 AL138895.2-201ENST00000603019 178 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC010424.2-201ENST00000607594 443 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 AL359757.1-201ENST00000623176 255 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC025262.3-201ENST00000623666 360 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC067931.1-201ENST00000624190 671 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 CR382285.2-201ENST00000624662 1495 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
FOXA3P55318 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 MIR448-201ENST00000362131 111 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 AL391422.1-201ENST00000402155 436 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 RNU6ATAC18P-201ENST00000408413 101 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC009302.1-201ENST00000417147 390 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 CLNS1AP1-201ENST00000435954 682 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 AL162388.1-201ENST00000450912 352 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.54□□□□□ -1.84
FOXA3P55318 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 PPBPP1-201ENST00000510807 373 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC006499.6-201ENST00000511169 607 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 AC008694.2-201ENST00000517591 306 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXA3P55318 AP000919.1-201ENST00000582850 985 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 SUGT1P3-202ENST00000604259 383 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC109309.2-201ENST00000612597 332 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AL353726.1-201ENST00000614041 1000 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC3.54□□□□□ -1.84
FOXA3P55318 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.54□□□□□ -1.84
FOXA3P55318 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC3.54□□□□□ -1.84
FOXA3P55318 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 AC016588.2-201ENST00000632484 3021 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 AC074029.4-201ENST00000624796 1859 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.54□□□□□ -1.84
FOXA3P55318 ZFRP1-201ENST00000457579 2970 ntBASIC3.54□□□□□ -1.84
FOXA3P55318 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
FOXA3P55318 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
FOXA3P55318 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
FOXA3P55318 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
FOXA3P55318 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
FOXA3P55318 OR7E156P-201ENST00000400303 464 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 HSPD1P16-201ENST00000402302 394 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 ATP6V1G1P7-201ENST00000415853 349 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC3.53□□□□□ -1.84
FOXA3P55318 UBTFL3-201ENST00000418934 1024 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 SKP1P3-201ENST00000429280 487 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 CYCSP12-201ENST00000437729 300 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC064862.4-201ENST00000442180 334 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.53□□□□□ -1.84
FOXA3P55318 SEPT14P1-201ENST00000458703 648 ntBASIC3.53□□□□□ -1.84
FOXA3P55318 AC009127.1-201ENST00000467090 155 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms