Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 Y_RNA.719-201ENST00000517156 106 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL12P48061 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL12P48061 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL12P48061 SNORA74C-1-201ENST00000580726 201 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 AC069366.1-201ENST00000583159 838 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 VN1R85P-201ENST00000601587 426 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 AC008782.1-201ENST00000603386 430 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 RNF138P2-201ENST00000603490 592 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 AL589935.2-201ENST00000616471 1231 ntBASIC4.8□□□□□ -1.64
CXCL12P48061 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.8□□□□□ -1.64
CXCL12P48061 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC4.8□□□□□ -1.64
CXCL12P48061 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL12P48061 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CXCL12P48061 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
CXCL12P48061 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
CXCL12P48061 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CXCL12P48061 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.8□□□□□ -1.64
CXCL12P48061 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL12P48061 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.8□□□□□ -1.64
CXCL12P48061 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL12P48061 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL12P48061 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CXCL12P48061 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 IQCB2P-201ENST00000401788 1633 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 AL450345.1-202ENST00000605741 3881 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL12P48061 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL12P48061 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CXCL12P48061 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC025031.4-201ENST00000621248 3271 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 AC020633.1-201ENST00000468439 2247 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 OR4K17-201ENST00000315543 1032 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 SNORA71.2-201ENST00000364941 134 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 RNU1-64P-201ENST00000365443 163 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL12P48061 RNA5SP241-201ENST00000391326 114 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CXCL12P48061 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.79□□□□□ -1.64
CXCL12P48061 RPS17P8-201ENST00000434525 335 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL12P48061 GAPDHP14-201ENST00000450472 937 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 RPL21P129-201ENST00000491732 478 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 ASNSP4-201ENST00000511103 447 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL12P48061 AC092709.1-201ENST00000521355 1045 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.79□□□□□ -1.64
CXCL12P48061 MIR3138-201ENST00000585238 82 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 AC093227.2-201ENST00000589357 285 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 AL133338.2-201ENST00000604292 736 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AC067959.1-201ENST00000604334 379 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 AL133243.1-201ENST00000614487 366 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 TLK1P1-201ENST00000456760 2440 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.79□□□□□ -1.64
CXCL12P48061 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 AC068870.3-201ENST00000625077 2536 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 SMG1P7-201ENST00000565246 2704 ntBASIC4.79□□□□□ -1.64
CXCL12P48061 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CXCL12P48061 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
CXCL12P48061 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL12P48061 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL12P48061 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
CXCL12P48061 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 ZNF137P-201ENST00000456718 1920 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL12P48061 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL12P48061 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CXCL12P48061 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
CXCL12P48061 AC100871.1-201ENST00000507871 1456 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.78□□□□□ -1.64
CXCL12P48061 SNORA37-201ENST00000384504 129 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 SNORA70C-201ENST00000384538 135 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 RNU1-82P-201ENST00000390851 165 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.78□□□□□ -1.64
CXCL12P48061 AL158073.1-201ENST00000426848 1104 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 NDUFA5P1-201ENST00000433858 341 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL12P48061 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL12P48061 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.78□□□□□ -1.64
CXCL12P48061 RPS17P2-201ENST00000461663 408 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL12P48061 MIR2116-201ENST00000517221 80 ntBASIC4.78□□□□□ -1.64
CXCL12P48061 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.78□□□□□ -1.64
CXCL12P48061 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms