Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 U3.2-201ENST00000362981 210 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 RNU1-19P-201ENST00000363306 165 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC104297.1-201ENST00000393779 870 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 HSPA8P15-201ENST00000401676 786 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 NUDT19P3-201ENST00000404698 555 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 ATF1P1-201ENST00000406040 927 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 RNU2-17P-201ENST00000410290 190 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AP000534.2-201ENST00000412729 568 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC6.16□□□□□ -1.42
SMARCA1P28370 GTF2IP5-201ENST00000414608 731 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 BX510359.3-201ENST00000422168 306 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC6.16□□□□□ -1.42
SMARCA1P28370 RPL7AP49-201ENST00000429522 581 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AL591438.1-201ENST00000433508 581 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.16□□□□□ -1.42
SMARCA1P28370 ELOCP11-201ENST00000436690 332 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 FABP5P3-201ENST00000437960 408 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 RPS27P5-201ENST00000444247 244 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 ELOCP16-201ENST00000444494 332 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 RN7SL172P-201ENST00000460535 303 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 RN7SL177P-201ENST00000476596 299 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 UBA52P7-201ENST00000486088 380 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC020699.1-201ENST00000505161 445 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC084373.1-201ENST00000603311 235 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AC095055.1-201ENST00000603472 1113 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AL160237.3-201ENST00000604114 1013 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC009027.1-201ENST00000604510 479 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.16□□□□□ -1.42
SMARCA1P28370 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SMARCA1P28370 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC007382.1-201ENST00000624376 2618 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 MFSD8-213ENST00000641134 1327 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SMARCA1P28370 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SMARCA1P28370 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC6.15□□□□□ -1.42
SMARCA1P28370 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SMARCA1P28370 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SMARCA1P28370 MIR223-201ENST00000385204 110 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SMARCA1P28370 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
SMARCA1P28370 RPA2P2-201ENST00000419698 796 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AL355433.1-201ENST00000422804 300 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC115285.1-201ENST00000424879 736 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.15□□□□□ -1.42
SMARCA1P28370 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC6.15□□□□□ -1.42
SMARCA1P28370 ARF4P4-201ENST00000439608 520 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 CNOT7P2-201ENST00000441051 832 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC090804.1-201ENST00000448870 490 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 MTND1P31-201ENST00000449206 961 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 RPL7P61-201ENST00000451721 751 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SMARCA1P28370 AC022133.1-201ENST00000490961 571 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 IGBP1P4-201ENST00000503202 879 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 BTG4P1-201ENST00000510421 183 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 HMGN1P9-201ENST00000515212 298 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 RN7SKP287-201ENST00000516546 266 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 RNA5SP34-201ENST00000516887 130 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC091163.3-201ENST00000518269 1144 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC6.15□□□□□ -1.42
SMARCA1P28370 AL132857.1-201ENST00000555180 708 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 MTND3P12-201ENST00000559068 328 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC010735.1-201ENST00000567305 1026 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 MIR1269B-201ENST00000580405 75 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
SMARCA1P28370 AL451049.1-201ENST00000608672 497 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 AC245100.7-201ENST00000609678 442 ntBASIC6.15□□□□□ -1.42
SMARCA1P28370 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.42
SMARCA1P28370 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.15□□□□□ -1.43
SMARCA1P28370 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms