Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Vps39Q8R5L3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Vps39Q8R5L3 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
Vps39Q8R5L3 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Vps39Q8R5L3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Vps39Q8R5L3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Vps39Q8R5L3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Vps39Q8R5L3 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Vps39Q8R5L3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Vps39Q8R5L3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Vps39Q8R5L3 Gm30023-201ENSMUST00000197970 889 ntBASIC23.49■■□□□ 1.35
Vps39Q8R5L3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Vps39Q8R5L3 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Vps39Q8R5L3 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Vps39Q8R5L3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.45■■□□□ 1.35
Vps39Q8R5L3 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
Vps39Q8R5L3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Vps39Q8R5L3 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Vps39Q8R5L3 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC23.45■■□□□ 1.34
Vps39Q8R5L3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC23.44■■□□□ 1.34
Vps39Q8R5L3 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Vps39Q8R5L3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Vps39Q8R5L3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC23.43■■□□□ 1.34
Vps39Q8R5L3 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
Vps39Q8R5L3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Vps39Q8R5L3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Vps39Q8R5L3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Vps39Q8R5L3 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Vps39Q8R5L3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Vps39Q8R5L3 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Vps39Q8R5L3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC23.41■■□□□ 1.34
Vps39Q8R5L3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Vps39Q8R5L3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Vps39Q8R5L3 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Vps39Q8R5L3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Vps39Q8R5L3 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Vps39Q8R5L3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.34
Vps39Q8R5L3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Vps39Q8R5L3 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Vps39Q8R5L3 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
Vps39Q8R5L3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Vps39Q8R5L3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Vps39Q8R5L3 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC23.36■■□□□ 1.33
Vps39Q8R5L3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC23.36■■□□□ 1.33
Vps39Q8R5L3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Vps39Q8R5L3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Vps39Q8R5L3 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
Vps39Q8R5L3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Vps39Q8R5L3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Vps39Q8R5L3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC23.34■■□□□ 1.33
Vps39Q8R5L3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Vps39Q8R5L3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Vps39Q8R5L3 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
Vps39Q8R5L3 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.32■■□□□ 1.32
Vps39Q8R5L3 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.32■■□□□ 1.32
Vps39Q8R5L3 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Vps39Q8R5L3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC23.32■■□□□ 1.32
Vps39Q8R5L3 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Vps39Q8R5L3 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps39Q8R5L3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Vps39Q8R5L3 Particl-201ENSMUST00000205370 1560 ntBASIC23.29■■□□□ 1.32
Vps39Q8R5L3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Vps39Q8R5L3 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Vps39Q8R5L3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Vps39Q8R5L3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps39Q8R5L3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps39Q8R5L3 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps39Q8R5L3 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps39Q8R5L3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Vps39Q8R5L3 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Vps39Q8R5L3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Vps39Q8R5L3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Vps39Q8R5L3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Vps39Q8R5L3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Vps39Q8R5L3 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Vps39Q8R5L3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Vps39Q8R5L3 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Vps39Q8R5L3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps39Q8R5L3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Vps39Q8R5L3 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Vps39Q8R5L3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Vps39Q8R5L3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Vps39Q8R5L3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Vps39Q8R5L3 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms