Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Clcn1Q64347 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
Clcn1Q64347 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
Clcn1Q64347 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
Clcn1Q64347 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Clcn1Q64347 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC30.23■■■□□ 2.43
Clcn1Q64347 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Clcn1Q64347 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Clcn1Q64347 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
Clcn1Q64347 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Clcn1Q64347 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Clcn1Q64347 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Clcn1Q64347 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC30.21■■■□□ 2.43
Clcn1Q64347 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Clcn1Q64347 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Clcn1Q64347 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Clcn1Q64347 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.2■■■□□ 2.43
Clcn1Q64347 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Clcn1Q64347 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
Clcn1Q64347 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Clcn1Q64347 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Clcn1Q64347 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
Clcn1Q64347 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Clcn1Q64347 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Clcn1Q64347 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Clcn1Q64347 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Clcn1Q64347 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Clcn1Q64347 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
Clcn1Q64347 Gm16437-201ENSMUST00000025669 507 ntBASIC30.15■■■□□ 2.42
Clcn1Q64347 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Clcn1Q64347 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC30.14■■■□□ 2.42
Clcn1Q64347 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Clcn1Q64347 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Clcn1Q64347 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Clcn1Q64347 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC30.13■■■□□ 2.41
Clcn1Q64347 Gm4799-201ENSMUST00000095396 657 ntBASIC30.13■■■□□ 2.41
Clcn1Q64347 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Clcn1Q64347 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Clcn1Q64347 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC30.12■■■□□ 2.41
Clcn1Q64347 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Clcn1Q64347 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
Clcn1Q64347 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
Clcn1Q64347 Gm9806-201ENSMUST00000051080 552 ntBASIC30.1■■■□□ 2.41
Clcn1Q64347 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Clcn1Q64347 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Clcn1Q64347 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC30.08■■■□□ 2.41
Clcn1Q64347 Gm12366-201ENSMUST00000121722 873 ntBASIC30.08■■■□□ 2.41
Clcn1Q64347 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC30.08■■■□□ 2.41
Clcn1Q64347 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC30.08■■■□□ 2.41
Clcn1Q64347 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC30.08■■■□□ 2.41
Clcn1Q64347 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Clcn1Q64347 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC30.08■■■□□ 2.41
Clcn1Q64347 Gm5786-201ENSMUST00000085368 882 ntBASIC30.08■■■□□ 2.41
Clcn1Q64347 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC30.07■■■□□ 2.4
Clcn1Q64347 Gm11687-201ENSMUST00000118911 886 ntBASIC30.07■■■□□ 2.4
Clcn1Q64347 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Clcn1Q64347 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC30.06■■■□□ 2.4
Clcn1Q64347 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Clcn1Q64347 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
Clcn1Q64347 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Clcn1Q64347 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC30.04■■■□□ 2.4
Clcn1Q64347 Gm45364-201ENSMUST00000210883 159 ntBASIC30.04■■■□□ 2.4
Clcn1Q64347 Pkd1-207ENSMUST00000228550 1050 ntBASIC30.04■■■□□ 2.4
Clcn1Q64347 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Clcn1Q64347 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Clcn1Q64347 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
Clcn1Q64347 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Clcn1Q64347 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Clcn1Q64347 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
Clcn1Q64347 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Clcn1Q64347 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Clcn1Q64347 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC30■■■□□ 2.39
Clcn1Q64347 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
Clcn1Q64347 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC30■■■□□ 2.39
Clcn1Q64347 Gm27502-201ENSMUST00000183495 199 ntBASIC29.99■■■□□ 2.39
Clcn1Q64347 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.99■■■□□ 2.39
Clcn1Q64347 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC29.98■■■□□ 2.39
Clcn1Q64347 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC29.98■■■□□ 2.39
Clcn1Q64347 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC29.98■■■□□ 2.39
Clcn1Q64347 Mir3960-201ENSMUST00000198213 73 ntBASIC29.98■■■□□ 2.39
Clcn1Q64347 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Clcn1Q64347 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC29.97■■■□□ 2.39
Clcn1Q64347 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Clcn1Q64347 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Clcn1Q64347 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Clcn1Q64347 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
Clcn1Q64347 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Clcn1Q64347 Gm37136-201ENSMUST00000194368 194 ntBASIC29.95■■■□□ 2.39
Clcn1Q64347 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
Clcn1Q64347 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Clcn1Q64347 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC29.94■■■□□ 2.38
Clcn1Q64347 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Clcn1Q64347 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Clcn1Q64347 AC154454.1-201ENSMUST00000225253 216 ntBASIC29.93■■■□□ 2.38
Clcn1Q64347 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Clcn1Q64347 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Clcn1Q64347 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
Clcn1Q64347 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC29.91■■■□□ 2.38
Clcn1Q64347 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
Clcn1Q64347 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms