Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 AC154454.1-201ENSMUST00000225253 216 ntBASIC30.06■■■□□ 2.4
Ubr3Q5U430 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Ubr3Q5U430 Gm7332-201ENSMUST00000118351 454 ntBASIC30.04■■■□□ 2.4
Ubr3Q5U430 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC30.04■■■□□ 2.4
Ubr3Q5U430 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Ubr3Q5U430 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Ubr3Q5U430 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Ubr3Q5U430 Mir3960-201ENSMUST00000198213 73 ntBASIC29.99■■■□□ 2.39
Ubr3Q5U430 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC29.99■■■□□ 2.39
Ubr3Q5U430 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Ubr3Q5U430 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
Ubr3Q5U430 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Ubr3Q5U430 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Ubr3Q5U430 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Ubr3Q5U430 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Ubr3Q5U430 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
Ubr3Q5U430 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Ubr3Q5U430 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Ubr3Q5U430 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC29.91■■■□□ 2.38
Ubr3Q5U430 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC29.91■■■□□ 2.38
Ubr3Q5U430 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Ubr3Q5U430 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC29.91■■■□□ 2.38
Ubr3Q5U430 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Ubr3Q5U430 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC29.9■■■□□ 2.38
Ubr3Q5U430 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Ubr3Q5U430 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
Ubr3Q5U430 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Ubr3Q5U430 Gm37136-201ENSMUST00000194368 194 ntBASIC29.87■■■□□ 2.37
Ubr3Q5U430 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC29.87■■■□□ 2.37
Ubr3Q5U430 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Ubr3Q5U430 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Ubr3Q5U430 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Ubr3Q5U430 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC29.86■■■□□ 2.37
Ubr3Q5U430 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC29.86■■■□□ 2.37
Ubr3Q5U430 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Ubr3Q5U430 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
Ubr3Q5U430 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Ubr3Q5U430 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Ubr3Q5U430 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Ubr3Q5U430 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Ubr3Q5U430 AC151971.4-201ENSMUST00000214717 704 ntBASIC29.84■■■□□ 2.37
Ubr3Q5U430 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Ubr3Q5U430 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Ubr3Q5U430 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
Ubr3Q5U430 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.37
Ubr3Q5U430 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC29.82■■■□□ 2.37
Ubr3Q5U430 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
Ubr3Q5U430 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC29.82■■■□□ 2.36
Ubr3Q5U430 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
Ubr3Q5U430 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC29.8■■■□□ 2.36
Ubr3Q5U430 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC29.79■■■□□ 2.36
Ubr3Q5U430 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Ubr3Q5U430 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
Ubr3Q5U430 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Ubr3Q5U430 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Ubr3Q5U430 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC29.78■■■□□ 2.36
Ubr3Q5U430 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Ubr3Q5U430 Gm14523-201ENSMUST00000117260 558 ntBASIC29.77■■■□□ 2.36
Ubr3Q5U430 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC29.76■■■□□ 2.36
Ubr3Q5U430 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Ubr3Q5U430 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ubr3Q5U430 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ubr3Q5U430 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Ubr3Q5U430 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC29.74■■■□□ 2.35
Ubr3Q5U430 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Ubr3Q5U430 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
Ubr3Q5U430 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Ubr3Q5U430 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
Ubr3Q5U430 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
Ubr3Q5U430 Gm12818-201ENSMUST00000117562 1349 ntBASIC29.71■■■□□ 2.35
Ubr3Q5U430 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC29.71■■■□□ 2.35
Ubr3Q5U430 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Ubr3Q5U430 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Ubr3Q5U430 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Ubr3Q5U430 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.7■■■□□ 2.34
Ubr3Q5U430 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Ubr3Q5U430 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Ubr3Q5U430 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Ubr3Q5U430 AC122317.2-201ENSMUST00000218708 1248 ntBASIC29.68■■■□□ 2.34
Ubr3Q5U430 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC29.68■■■□□ 2.34
Ubr3Q5U430 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Ubr3Q5U430 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Ubr3Q5U430 Gm13889-201ENSMUST00000099689 1386 ntBASIC29.67■■■□□ 2.34
Ubr3Q5U430 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Ubr3Q5U430 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Ubr3Q5U430 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC29.66■■■□□ 2.34
Ubr3Q5U430 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
Ubr3Q5U430 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
Ubr3Q5U430 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Ubr3Q5U430 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC29.65■■■□□ 2.34
Ubr3Q5U430 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Ubr3Q5U430 Gm5812-201ENSMUST00000061073 957 ntBASIC29.65■■■□□ 2.34
Ubr3Q5U430 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Ubr3Q5U430 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.64■■■□□ 2.34
Ubr3Q5U430 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
Ubr3Q5U430 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC29.63■■■□□ 2.33
Ubr3Q5U430 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Ubr3Q5U430 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
Ubr3Q5U430 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
Ubr3Q5U430 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms