Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Sox1P53783 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC24.91■■□□□ 1.58
Sox1P53783 Mir3960-201ENSMUST00000198213 73 ntBASIC24.91■■□□□ 1.58
Sox1P53783 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
Sox1P53783 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
Sox1P53783 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Sox1P53783 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
Sox1P53783 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC24.9■■□□□ 1.58
Sox1P53783 Gm30023-201ENSMUST00000197970 889 ntBASIC24.9■■□□□ 1.58
Sox1P53783 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Sox1P53783 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Sox1P53783 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.89■■□□□ 1.58
Sox1P53783 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Sox1P53783 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Sox1P53783 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
Sox1P53783 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Sox1P53783 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
Sox1P53783 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Sox1P53783 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Sox1P53783 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Sox1P53783 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC24.86■■□□□ 1.57
Sox1P53783 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC24.86■■□□□ 1.57
Sox1P53783 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Sox1P53783 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Sox1P53783 Gm10420-201ENSMUST00000121713 882 ntBASIC24.85■■□□□ 1.57
Sox1P53783 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Sox1P53783 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Sox1P53783 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.84■■□□□ 1.57
Sox1P53783 Rps24-207ENSMUST00000224568 714 ntBASIC24.84■■□□□ 1.57
Sox1P53783 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Sox1P53783 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Sox1P53783 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Sox1P53783 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
Sox1P53783 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC24.81■■□□□ 1.56
Sox1P53783 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC24.81■■□□□ 1.56
Sox1P53783 AC151971.4-201ENSMUST00000214717 704 ntBASIC24.81■■□□□ 1.56
Sox1P53783 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC24.81■■□□□ 1.56
Sox1P53783 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Sox1P53783 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Sox1P53783 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
Sox1P53783 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Sox1P53783 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Sox1P53783 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Sox1P53783 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Sox1P53783 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Sox1P53783 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC24.79■■□□□ 1.56
Sox1P53783 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Sox1P53783 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Sox1P53783 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
Sox1P53783 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Sox1P53783 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Sox1P53783 Serp2-204ENSMUST00000228055 705 ntBASIC24.78■■□□□ 1.56
Sox1P53783 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC24.76■■□□□ 1.55
Sox1P53783 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Sox1P53783 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Sox1P53783 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Sox1P53783 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Sox1P53783 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Sox1P53783 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC24.73■■□□□ 1.55
Sox1P53783 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
Sox1P53783 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Sox1P53783 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
Sox1P53783 Gm5297-201ENSMUST00000198555 1171 ntBASIC24.72■■□□□ 1.55
Sox1P53783 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Sox1P53783 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Sox1P53783 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.71■■□□□ 1.55
Sox1P53783 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.71■■□□□ 1.55
Sox1P53783 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Sox1P53783 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Sox1P53783 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Sox1P53783 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Sox1P53783 Gm15820-201ENSMUST00000201566 728 ntBASIC24.68■■□□□ 1.54
Sox1P53783 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC24.68■■□□□ 1.54
Sox1P53783 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Sox1P53783 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC24.67■■□□□ 1.54
Sox1P53783 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC24.67■■□□□ 1.54
Sox1P53783 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Sox1P53783 Gm14117-201ENSMUST00000122417 843 ntBASIC24.66■■□□□ 1.54
Sox1P53783 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Sox1P53783 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Sox1P53783 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Sox1P53783 Gm45102-201ENSMUST00000207427 857 ntBASIC24.65■■□□□ 1.54
Sox1P53783 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Sox1P53783 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
Sox1P53783 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24.64■■□□□ 1.54
Sox1P53783 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC24.64■■□□□ 1.54
Sox1P53783 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Sox1P53783 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Sox1P53783 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
Sox1P53783 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Sox1P53783 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
Sox1P53783 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.62■■□□□ 1.53
Sox1P53783 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Sox1P53783 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Sox1P53783 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.61■■□□□ 1.53
Sox1P53783 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Sox1P53783 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Sox1P53783 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.6■■□□□ 1.53
Sox1P53783 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Sox1P53783 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.6■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms