Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nkx2-1P50220 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Nkx2-1P50220 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.36■□□□□ 0.69
Nkx2-1P50220 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
Nkx2-1P50220 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-1P50220 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.35■□□□□ 0.69
Nkx2-1P50220 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-1P50220 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-1P50220 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Nkx2-1P50220 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx2-1P50220 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx2-1P50220 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Nkx2-1P50220 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Nkx2-1P50220 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Nkx2-1P50220 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Nkx2-1P50220 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC19.33■□□□□ 0.68
Nkx2-1P50220 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Nkx2-1P50220 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Nkx2-1P50220 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Nkx2-1P50220 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx2-1P50220 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx2-1P50220 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx2-1P50220 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.32■□□□□ 0.68
Nkx2-1P50220 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nkx2-1P50220 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nkx2-1P50220 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Nkx2-1P50220 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx2-1P50220 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nkx2-1P50220 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Nkx2-1P50220 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Nkx2-1P50220 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Nkx2-1P50220 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Nkx2-1P50220 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Nkx2-1P50220 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Nkx2-1P50220 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Nkx2-1P50220 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx2-1P50220 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx2-1P50220 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx2-1P50220 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nkx2-1P50220 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.27■□□□□ 0.68
Nkx2-1P50220 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Nkx2-1P50220 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Nkx2-1P50220 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Nkx2-1P50220 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Nkx2-1P50220 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Nkx2-1P50220 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx2-1P50220 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Nkx2-1P50220 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx2-1P50220 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nkx2-1P50220 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.21■□□□□ 0.67
Nkx2-1P50220 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nkx2-1P50220 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx2-1P50220 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Nkx2-1P50220 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nkx2-1P50220 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx2-1P50220 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx2-1P50220 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx2-1P50220 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx2-1P50220 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.18■□□□□ 0.66
Nkx2-1P50220 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nkx2-1P50220 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx2-1P50220 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Nkx2-1P50220 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx2-1P50220 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Nkx2-1P50220 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Nkx2-1P50220 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx2-1P50220 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx2-1P50220 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx2-1P50220 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Nkx2-1P50220 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.16■□□□□ 0.66
Nkx2-1P50220 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Nkx2-1P50220 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Nkx2-1P50220 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms