Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a5A6H584 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Col6a5A6H584 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a5A6H584 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Col6a5A6H584 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col6a5A6H584 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Col6a5A6H584 Gm15820-201ENSMUST00000201566 728 ntBASIC18.67■□□□□ 0.58
Col6a5A6H584 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a5A6H584 Serp2-204ENSMUST00000228055 705 ntBASIC18.66■□□□□ 0.58
Col6a5A6H584 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col6a5A6H584 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a5A6H584 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.65■□□□□ 0.58
Col6a5A6H584 Rps24-207ENSMUST00000224568 714 ntBASIC18.65■□□□□ 0.58
Col6a5A6H584 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a5A6H584 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col6a5A6H584 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a5A6H584 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC18.64■□□□□ 0.57
Col6a5A6H584 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.64■□□□□ 0.57
Col6a5A6H584 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col6a5A6H584 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a5A6H584 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col6a5A6H584 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a5A6H584 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Col6a5A6H584 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col6a5A6H584 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col6a5A6H584 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col6a5A6H584 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC18.6■□□□□ 0.57
Col6a5A6H584 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col6a5A6H584 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col6a5A6H584 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.58■□□□□ 0.57
Col6a5A6H584 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col6a5A6H584 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col6a5A6H584 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col6a5A6H584 Gm45102-201ENSMUST00000207427 857 ntBASIC18.58■□□□□ 0.56
Col6a5A6H584 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col6a5A6H584 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC18.58■□□□□ 0.56
Col6a5A6H584 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col6a5A6H584 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col6a5A6H584 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col6a5A6H584 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col6a5A6H584 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col6a5A6H584 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col6a5A6H584 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.56■□□□□ 0.56
Col6a5A6H584 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col6a5A6H584 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col6a5A6H584 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col6a5A6H584 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col6a5A6H584 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col6a5A6H584 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col6a5A6H584 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col6a5A6H584 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col6a5A6H584 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col6a5A6H584 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC18.53■□□□□ 0.56
Col6a5A6H584 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col6a5A6H584 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col6a5A6H584 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Col6a5A6H584 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col6a5A6H584 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Col6a5A6H584 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a5A6H584 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.52■□□□□ 0.56
Col6a5A6H584 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC18.52■□□□□ 0.56
Col6a5A6H584 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col6a5A6H584 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC18.52■□□□□ 0.55
Col6a5A6H584 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Col6a5A6H584 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a5A6H584 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a5A6H584 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col6a5A6H584 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col6a5A6H584 Mir3960-201ENSMUST00000198213 73 ntBASIC18.5■□□□□ 0.55
Col6a5A6H584 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC18.49■□□□□ 0.55
Col6a5A6H584 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col6a5A6H584 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.48■□□□□ 0.55
Col6a5A6H584 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a5A6H584 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Col6a5A6H584 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a5A6H584 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col6a5A6H584 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Col6a5A6H584 Gm14117-201ENSMUST00000122417 843 ntBASIC18.47■□□□□ 0.55
Col6a5A6H584 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Col6a5A6H584 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a5A6H584 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col6a5A6H584 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Col6a5A6H584 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a5A6H584 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC18.46■□□□□ 0.55
Col6a5A6H584 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col6a5A6H584 Gm12818-201ENSMUST00000117562 1349 ntBASIC18.45■□□□□ 0.54
Col6a5A6H584 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col6a5A6H584 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col6a5A6H584 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col6a5A6H584 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col6a5A6H584 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col6a5A6H584 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col6a5A6H584 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Col6a5A6H584 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col6a5A6H584 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col6a5A6H584 Gm13238-201ENSMUST00000117655 780 ntBASIC18.43■□□□□ 0.54
Col6a5A6H584 AC151971.4-201ENSMUST00000214717 704 ntBASIC18.43■□□□□ 0.54
Col6a5A6H584 AC153911.1-201ENSMUST00000220378 758 ntBASIC18.43■□□□□ 0.54
Col6a5A6H584 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC18.42■□□□□ 0.54
Col6a5A6H584 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms