Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 E2F6P2-201ENST00000420708 748 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 AC021876.1-201ENST00000425959 359 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 GAPDHP14-201ENST00000450472 937 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 AL356863.1-201ENST00000623378 1080 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
BRCA1P38398 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
BRCA1P38398 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC5.7□□□□□ -1.5
BRCA1P38398 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 SNORA71.3-201ENST00000362582 128 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 RPL7P58-201ENST00000402913 758 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AL136231.1-201ENST00000429407 730 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 BTF3P10-201ENST00000433415 495 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 RPL6P5-201ENST00000445678 828 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.7□□□□□ -1.5
BRCA1P38398 PRSS3P4-201ENST00000453323 162 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.7□□□□□ -1.5
BRCA1P38398 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.7□□□□□ -1.5
BRCA1P38398 AC023632.4-201ENST00000517783 191 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AC010476.1-201ENST00000519111 851 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.7□□□□□ -1.5
BRCA1P38398 OR8R1P-201ENST00000543943 764 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AC090515.3-201ENST00000560431 315 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 RN7SL290P-201ENST00000578661 300 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 AC017100.2-201ENST00000584628 355 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 BX005214.3-202ENST00000619809 325 ntBASIC5.7□□□□□ -1.5
BRCA1P38398 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
BRCA1P38398 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.7□□□□□ -1.5
BRCA1P38398 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.7□□□□□ -1.5
BRCA1P38398 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
BRCA1P38398 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 AC069157.1-201ENST00000421749 137 ntBASIC5.69□□□□□ -1.5
BRCA1P38398 HSPE1P27-201ENST00000430808 296 ntBASIC5.69□□□□□ -1.5
BRCA1P38398 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 AC004980.3-201ENST00000447046 365 ntBASIC5.69□□□□□ -1.5
BRCA1P38398 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 RN7SL517P-201ENST00000462240 305 ntBASIC5.69□□□□□ -1.5
BRCA1P38398 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.69□□□□□ -1.5
BRCA1P38398 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC5.69□□□□□ -1.5
BRCA1P38398 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.69□□□□□ -1.5
BRCA1P38398 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 LARP1BP1-201ENST00000506036 1359 ntBASIC5.69□□□□□ -1.5
BRCA1P38398 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.69□□□□□ -1.5
BRCA1P38398 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BRCA1P38398 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.69□□□□□ -1.5
BRCA1P38398 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 MIR670-201ENST00000390142 98 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AL158827.1-201ENST00000416300 391 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
BRCA1P38398 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.68□□□□□ -1.5
BRCA1P38398 AC079804.1-201ENST00000461922 436 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 DSTNP2-201ENST00000504533 515 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AC092709.1-201ENST00000521355 1045 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.68□□□□□ -1.5
BRCA1P38398 AC018695.5-201ENST00000605872 315 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 AC091979.2-201ENST00000607514 214 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 OR7A19P-201ENST00000608051 733 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.68□□□□□ -1.5
BRCA1P38398 AC140479.6-201ENST00000633535 357 ntBASIC5.68□□□□□ -1.5
BRCA1P38398 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
BRCA1P38398 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.68□□□□□ -1.5
BRCA1P38398 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
BRCA1P38398 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
BRCA1P38398 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.68□□□□□ -1.5
BRCA1P38398 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms