Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
CUX2O14529 RNA5SP119-201ENST00000362715 117 ntBASIC8.26□□□□□ -1.09
CUX2O14529 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
CUX2O14529 RPL7P49-201ENST00000471402 708 ntBASIC8.26□□□□□ -1.09
CUX2O14529 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC8.26□□□□□ -1.09
CUX2O14529 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC8.26□□□□□ -1.09
CUX2O14529 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC8.26□□□□□ -1.09
CUX2O14529 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC8.26□□□□□ -1.09
CUX2O14529 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC8.26□□□□□ -1.09
CUX2O14529 RN7SL802P-201ENST00000577858 299 ntBASIC8.26□□□□□ -1.09
CUX2O14529 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC8.26□□□□□ -1.09
CUX2O14529 AC140479.6-201ENST00000633535 357 ntBASIC8.26□□□□□ -1.09
CUX2O14529 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
CUX2O14529 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
CUX2O14529 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 SNORA70.10-201ENST00000384515 134 ntBASIC8.25□□□□□ -1.09
CUX2O14529 RNU11-201ENST00000387069 134 ntBASIC8.25□□□□□ -1.09
CUX2O14529 RNA5SP345-201ENST00000410646 108 ntBASIC8.25□□□□□ -1.09
CUX2O14529 OR51B3P-201ENST00000412287 913 ntBASIC8.25□□□□□ -1.09
CUX2O14529 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX2O14529 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC8.25□□□□□ -1.09
CUX2O14529 HMGB3P5-201ENST00000428894 612 ntBASIC8.25□□□□□ -1.09
CUX2O14529 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX2O14529 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX2O14529 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC8.25□□□□□ -1.09
CUX2O14529 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC8.25□□□□□ -1.09
CUX2O14529 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 GMPSP1-201ENST00000514075 579 ntBASIC8.25□□□□□ -1.09
CUX2O14529 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC8.25□□□□□ -1.09
CUX2O14529 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC8.25□□□□□ -1.09
CUX2O14529 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC8.25□□□□□ -1.09
CUX2O14529 AL360012.1-201ENST00000602813 131 ntBASIC8.25□□□□□ -1.09
CUX2O14529 AC084757.4-201ENST00000616350 526 ntBASIC8.25□□□□□ -1.09
CUX2O14529 AC015722.2-201ENST00000622210 551 ntBASIC8.25□□□□□ -1.09
CUX2O14529 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC8.25□□□□□ -1.09
CUX2O14529 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
CUX2O14529 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
CUX2O14529 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
CUX2O14529 AC002525.1-201ENST00000624392 1622 ntBASIC8.24□□□□□ -1.09
CUX2O14529 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX2O14529 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX2O14529 RNA5SP223-201ENST00000365174 120 ntBASIC8.24□□□□□ -1.09
CUX2O14529 MIR7-3-201ENST00000384898 110 ntBASIC8.24□□□□□ -1.09
CUX2O14529 YY1P1-201ENST00000427625 668 ntBASIC8.24□□□□□ -1.09
CUX2O14529 YWHAZP2-201ENST00000440317 728 ntBASIC8.24□□□□□ -1.09
CUX2O14529 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 AC146944.2-203ENST00000502493 354 ntBASIC8.24□□□□□ -1.09
CUX2O14529 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC8.24□□□□□ -1.09
CUX2O14529 AC139495.1-202ENST00000513164 354 ntBASIC8.24□□□□□ -1.09
CUX2O14529 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC8.24□□□□□ -1.09
CUX2O14529 AC022726.1-201ENST00000587475 207 ntBASIC8.24□□□□□ -1.09
CUX2O14529 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC8.24□□□□□ -1.09
CUX2O14529 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
CUX2O14529 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
CUX2O14529 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 MAPK6PS2-201ENST00000379571 2060 ntBASIC8.23□□□□□ -1.09
CUX2O14529 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC8.23□□□□□ -1.09
CUX2O14529 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC8.23□□□□□ -1.09
CUX2O14529 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
CUX2O14529 EIF4A1P3-201ENST00000411521 244 ntBASIC8.23□□□□□ -1.09
CUX2O14529 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX2O14529 ARAFP2-201ENST00000440565 559 ntBASIC8.23□□□□□ -1.09
CUX2O14529 SSR3-206ENST00000476217 807 ntTSL 3 BASIC8.23□□□□□ -1.09
CUX2O14529 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC8.23□□□□□ -1.09
CUX2O14529 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC8.23□□□□□ -1.09
CUX2O14529 AL133338.2-201ENST00000604292 736 ntBASIC8.23□□□□□ -1.09
CUX2O14529 AL022401.1-201ENST00000619498 108 ntBASIC8.23□□□□□ -1.09
CUX2O14529 AL442639.1-201ENST00000625030 1899 ntBASIC8.23□□□□□ -1.09
CUX2O14529 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
CUX2O14529 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC8.23□□□□□ -1.09
CUX2O14529 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC8.23□□□□□ -1.09
CUX2O14529 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC8.23□□□□□ -1.09
CUX2O14529 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX2O14529 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CUX2O14529 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX2O14529 TBCAP2-201ENST00000416175 326 ntBASIC8.22□□□□□ -1.09
CUX2O14529 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC8.22□□□□□ -1.09
CUX2O14529 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC8.22□□□□□ -1.09
CUX2O14529 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC8.22□□□□□ -1.09
CUX2O14529 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
CUX2O14529 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
CUX2O14529 AC108064.1-201ENST00000513791 460 ntBASIC8.22□□□□□ -1.09
CUX2O14529 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms