Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC009643.2-201ENST00000603543 1448 ntBASIC4.63□□□□□ -1.67
LIM2P55344 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.63□□□□□ -1.67
LIM2P55344 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 OR10AB1P-202ENST00000641219 1686 ntBASIC4.62□□□□□ -1.67
LIM2P55344 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 RNU6-819P-201ENST00000364116 107 ntBASIC4.62□□□□□ -1.67
LIM2P55344 RNU6-670P-201ENST00000364312 104 ntBASIC4.62□□□□□ -1.67
LIM2P55344 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LIM2P55344 SNORA51.8-201ENST00000384234 132 ntBASIC4.62□□□□□ -1.67
LIM2P55344 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LIM2P55344 HMGB3P7-201ENST00000400214 611 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AL139039.2-201ENST00000407436 479 ntBASIC4.62□□□□□ -1.67
LIM2P55344 METTL5-204ENST00000409340 472 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 RNA5SP345-201ENST00000410646 108 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 TMBIM7P-201ENST00000418074 855 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.62□□□□□ -1.67
LIM2P55344 MTCO1P51-201ENST00000427672 1060 ntBASIC4.62□□□□□ -1.67
LIM2P55344 RPL34P6-201ENST00000432390 345 ntBASIC4.62□□□□□ -1.67
LIM2P55344 RAD1P2-201ENST00000446414 663 ntBASIC4.62□□□□□ -1.67
LIM2P55344 GYG1P1-201ENST00000460864 698 ntBASIC4.62□□□□□ -1.67
LIM2P55344 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 AC090686.1-201ENST00000481577 749 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC093270.2-201ENST00000486157 792 ntBASIC4.62□□□□□ -1.67
LIM2P55344 NDUFA5P12-201ENST00000503796 343 ntBASIC4.62□□□□□ -1.67
LIM2P55344 GAPDHP56-201ENST00000506031 988 ntBASIC4.62□□□□□ -1.67
LIM2P55344 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.62□□□□□ -1.67
LIM2P55344 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.62□□□□□ -1.67
LIM2P55344 SNORA70.17-201ENST00000516449 133 ntBASIC4.62□□□□□ -1.67
LIM2P55344 Y_RNA.719-201ENST00000517156 106 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.62□□□□□ -1.67
LIM2P55344 AP000676.2-201ENST00000529711 301 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.62□□□□□ -1.67
LIM2P55344 AC051619.2-201ENST00000559063 397 ntBASIC4.62□□□□□ -1.67
LIM2P55344 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LIM2P55344 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 CYCSP40-201ENST00000575927 294 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC009303.3-201ENST00000591103 736 ntBASIC4.62□□□□□ -1.67
LIM2P55344 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 AC020910.3-201ENST00000603701 874 ntBASIC4.62□□□□□ -1.67
LIM2P55344 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.62□□□□□ -1.67
LIM2P55344 AL391597.1-201ENST00000618707 694 ntBASIC4.62□□□□□ -1.67
LIM2P55344 IRF5P1-201ENST00000504852 2164 ntBASIC4.62□□□□□ -1.67
LIM2P55344 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.62□□□□□ -1.67
LIM2P55344 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIM2P55344 AC131971.1-201ENST00000332881 1482 ntBASIC4.62□□□□□ -1.67
LIM2P55344 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.61□□□□□ -1.67
LIM2P55344 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.61□□□□□ -1.67
LIM2P55344 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
LIM2P55344 MIR365B-201ENST00000362317 111 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.61□□□□□ -1.67
LIM2P55344 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.61□□□□□ -1.67
LIM2P55344 RPS26P4-201ENST00000431743 355 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.61□□□□□ -1.67
LIM2P55344 VN1R54P-201ENST00000435210 1049 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.61□□□□□ -1.67
LIM2P55344 RAB28P3-201ENST00000448325 597 ntBASIC4.61□□□□□ -1.67
LIM2P55344 SLC25A18P1-201ENST00000449385 454 ntBASIC4.61□□□□□ -1.67
LIM2P55344 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.61□□□□□ -1.67
LIM2P55344 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.61□□□□□ -1.67
LIM2P55344 AC091544.1-201ENST00000484702 348 ntBASIC4.61□□□□□ -1.67
LIM2P55344 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIM2P55344 NDUFB5P1-201ENST00000508134 564 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.61□□□□□ -1.67
LIM2P55344 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.61□□□□□ -1.67
LIM2P55344 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.61□□□□□ -1.67
LIM2P55344 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.61□□□□□ -1.67
LIM2P55344 MORF4L1P3-201ENST00000525966 950 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AC021006.3-201ENST00000530771 192 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AL049839.1-201ENST00000556151 657 ntBASIC4.61□□□□□ -1.67
LIM2P55344 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIM2P55344 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.61□□□□□ -1.67
LIM2P55344 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.61□□□□□ -1.67
LIM2P55344 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 AC100814.1-201ENST00000606963 623 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AC016911.1-201ENST00000613297 452 ntBASIC4.61□□□□□ -1.67
LIM2P55344 AL022401.1-201ENST00000619498 108 ntBASIC4.61□□□□□ -1.67
LIM2P55344 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 AC026523.2-201ENST00000625039 7739 ntBASIC4.61□□□□□ -1.67
LIM2P55344 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIM2P55344 AP001642.1-201ENST00000624727 2117 ntBASIC4.61□□□□□ -1.67
LIM2P55344 SALL4P2-201ENST00000423288 2910 ntBASIC4.61□□□□□ -1.67
LIM2P55344 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms