Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5SP269-201ENST00000459032 137 ntBASIC6.71□□□□□ -1.34
LIG3P49916 RPS4XP12-201ENST00000461747 709 ntBASIC6.71□□□□□ -1.34
LIG3P49916 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.71□□□□□ -1.34
LIG3P49916 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC6.71□□□□□ -1.34
LIG3P49916 AC015524.1-201ENST00000491585 472 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 AL390198.2-201ENST00000510553 222 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.71□□□□□ -1.34
LIG3P49916 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 OR7K1P-201ENST00000546439 926 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC005519.1-201ENST00000554490 601 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC091304.4-201ENST00000565703 620 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.71□□□□□ -1.34
LIG3P49916 RN7SL199P-201ENST00000578752 281 ntBASIC6.71□□□□□ -1.34
LIG3P49916 RN7SL656P-201ENST00000579044 281 ntBASIC6.71□□□□□ -1.34
LIG3P49916 MIR4732-201ENST00000581873 76 ntBASIC6.71□□□□□ -1.34
LIG3P49916 RN7SL404P-201ENST00000582421 281 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.71□□□□□ -1.34
LIG3P49916 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.71□□□□□ -1.34
LIG3P49916 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 AC109347.2-201ENST00000610220 349 ntBASIC6.71□□□□□ -1.34
LIG3P49916 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AL008636.1-201ENST00000625038 1018 ntBASIC6.71□□□□□ -1.34
LIG3P49916 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.71□□□□□ -1.34
LIG3P49916 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC6.71□□□□□ -1.34
LIG3P49916 LINC01739-205ENST00000641890 573 ntBASIC6.71□□□□□ -1.34
LIG3P49916 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIG3P49916 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIG3P49916 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
LIG3P49916 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
LIG3P49916 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 LYARP1-201ENST00000436977 1501 ntBASIC6.71□□□□□ -1.34
LIG3P49916 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.7□□□□□ -1.34
LIG3P49916 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.7□□□□□ -1.34
LIG3P49916 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 AC079949.2-201ENST00000617117 2933 ntBASIC6.7□□□□□ -1.34
LIG3P49916 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AL121950.1-201ENST00000624993 2077 ntBASIC6.7□□□□□ -1.34
LIG3P49916 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 RNU5D-1-201ENST00000363299 116 ntBASIC6.7□□□□□ -1.34
LIG3P49916 RNU6-867P-201ENST00000364956 107 ntBASIC6.7□□□□□ -1.34
LIG3P49916 RPL12P23-201ENST00000405880 490 ntBASIC6.7□□□□□ -1.34
LIG3P49916 MIR1303-201ENST00000408625 86 ntBASIC6.7□□□□□ -1.34
LIG3P49916 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.7□□□□□ -1.34
LIG3P49916 RNU2-66P-201ENST00000410650 161 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 PIGPP2-201ENST00000411569 458 ntBASIC6.7□□□□□ -1.34
LIG3P49916 RPL7AP14-201ENST00000424041 802 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AC242426.1-201ENST00000435270 960 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.7□□□□□ -1.34
LIG3P49916 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 TPT1P7-201ENST00000458300 517 ntBASIC6.7□□□□□ -1.34
LIG3P49916 RN7SL393P-201ENST00000463588 296 ntBASIC6.7□□□□□ -1.34
LIG3P49916 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AC126182.1-201ENST00000478134 357 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 ARL2BPP4-201ENST00000506854 471 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.7□□□□□ -1.34
LIG3P49916 AC023310.2-201ENST00000553844 547 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AP005262.1-201ENST00000582646 997 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC6.7□□□□□ -1.34
LIG3P49916 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 AC012175.1-201ENST00000603755 531 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC091946.2-201ENST00000606105 291 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.7□□□□□ -1.34
LIG3P49916 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.7□□□□□ -1.34
LIG3P49916 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC6.7□□□□□ -1.34
LIG3P49916 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AL356266.1-201ENST00000623311 483 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC095031.1-201ENST00000623685 672 ntBASIC6.7□□□□□ -1.34
LIG3P49916 AC063952.1-203ENST00000634410 658 ntBASIC6.7□□□□□ -1.34
LIG3P49916 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
LIG3P49916 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms