Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BTF3P10-201ENST00000433415 495 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 AC053481.1-201ENST00000467217 306 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 AC105137.1-201ENST00000484355 562 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.82□□□□□ -1.48
COL5A3P25940 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 SLC25A15P5-201ENST00000508033 253 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 RPL23AP53-201ENST00000521854 457 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 PRELID3BP3-201ENST00000584963 545 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 LINC00622-201ENST00000562811 1570 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 AC025031.4-201ENST00000621248 3271 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL5A3P25940 RNU1-64P-201ENST00000365443 163 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 COX6CP15-201ENST00000426313 211 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.81□□□□□ -1.48
COL5A3P25940 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A3P25940 CYCSP24-201ENST00000445119 316 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 HSFY6P-201ENST00000445573 403 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 NUTF2P3-201ENST00000448540 384 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A3P25940 AC034236.1-201ENST00000469891 373 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A3P25940 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A3P25940 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.81□□□□□ -1.48
COL5A3P25940 CYCSP40-201ENST00000575927 294 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.81□□□□□ -1.48
COL5A3P25940 AC073342.2-201ENST00000595842 1800 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL5A3P25940 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COL5A3P25940 IQCB2P-201ENST00000401788 1633 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 CASC19-255ENST00000641733 1385 ntBASIC5.81□□□□□ -1.48
COL5A3P25940 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL5A3P25940 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 SNX18P3-202ENST00000565670 1750 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A3P25940 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 RNU11-201ENST00000387069 134 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 AC011998.1-201ENST00000433403 117 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 RPL23AP52-201ENST00000439311 478 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 AC044797.1-201ENST00000445744 679 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 RN7SL303P-201ENST00000469773 251 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.8□□□□□ -1.48
COL5A3P25940 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.8□□□□□ -1.48
COL5A3P25940 MED28P5-201ENST00000528254 438 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 AL360012.1-201ENST00000602813 131 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A3P25940 MAPK10-328ENST00000641553 4009 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.8□□□□□ -1.48
COL5A3P25940 AL360270.2-201ENST00000562952 5985 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 AC092376.2-201ENST00000622621 4116 ntBASIC5.8□□□□□ -1.48
COL5A3P25940 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL5A3P25940 RNU1-94P-201ENST00000362627 173 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 NRBF2P2-201ENST00000413087 861 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AC007738.1-201ENST00000413892 348 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AL358176.3-201ENST00000420757 454 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 AC093166.2-201ENST00000455969 1017 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 SNORA84-201ENST00000459229 133 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 RN7SL604P-201ENST00000492589 296 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AK4P6-201ENST00000505168 528 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 PGBD4P4-201ENST00000509673 613 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 FKBP1BP1-201ENST00000553366 325 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 AC010547.7-201ENST00000570323 333 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 AP005019.3-201ENST00000620418 560 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.79□□□□□ -1.48
COL5A3P25940 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.79□□□□□ -1.48
COL5A3P25940 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.79□□□□□ -1.48
COL5A3P25940 EIF2AP4-201ENST00000424793 1781 ntBASIC5.79□□□□□ -1.48
COL5A3P25940 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.79□□□□□ -1.48
COL5A3P25940 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL5A3P25940 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms