Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 U3.32-201ENST00000408116 212 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 OR2B7P-201ENST00000429302 934 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AL359073.1-201ENST00000448036 403 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 VN1R85P-201ENST00000601587 426 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 ZNF652P1-201ENST00000442420 1309 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 SNORD113.2-201ENST00000364166 89 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 BX276092.6-201ENST00000430476 250 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 BX276092.8-201ENST00000455722 250 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC034236.1-201ENST00000469891 373 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 SEPT7P6-201ENST00000469999 1143 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 RN7SKP276-201ENST00000516242 268 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC022360.1-201ENST00000521058 340 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 BNIP3P7-201ENST00000605641 516 ntBASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC9.41□□□□□ -0.9
SHROOM4Q9ULL8 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 MIR23B-201ENST00000384832 97 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 AC098592.2-201ENST00000413158 265 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 BMS1P19-201ENST00000433925 393 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 Z95152.1-201ENST00000453556 656 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 RPL7AP10-201ENST00000481016 791 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 AC090058.1-201ENST00000498788 435 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 AC098976.1-201ENST00000513014 541 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 SNORA48.9-201ENST00000516419 162 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 AC090953.1-201ENST00000604305 1092 ntBASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SHROOM4Q9ULL8 U3.22-201ENST00000391120 215 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 RPL17P50-201ENST00000396131 546 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 VN1R31P-201ENST00000417498 730 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 CENPIP1-201ENST00000425713 902 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 EEF1A1P1-201ENST00000447052 739 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 MIR7853-201ENST00000584820 132 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 QTRT1P1-201ENST00000604344 1078 ntBASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
SHROOM4Q9ULL8 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AC116158.1-201ENST00000560231 2129 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 MFSD8-220ENST00000641243 1422 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 MTCO1P15-201ENST00000529569 1526 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AL136116.2-201ENST00000404020 785 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AL035079.1-201ENST00000405210 287 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 RPL12P9-201ENST00000412942 488 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 CEACAMP6-201ENST00000452007 574 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AP000619.2-201ENST00000546014 969 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AC117490.2-201ENST00000610042 594 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 AC241377.1-201ENST00000619797 406 ntBASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
SHROOM4Q9ULL8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 AL590240.1-201ENST00000334118 313 ntBASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC9.38□□□□□ -0.91
SHROOM4Q9ULL8 ATP5HP3-201ENST00000396994 486 ntBASIC9.38□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms