Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 MAPK10-328ENST00000641553 4009 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC126755.2-208ENST00000327792 462 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC138969.1-213ENST00000331436 462 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RPL32P3-201ENST00000359025 275 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNA5SP335-201ENST00000363817 110 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-1320P-201ENST00000390838 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-1269P-201ENST00000391139 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 LSM5-206ENST00000409987 504 ntTSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU2-22P-201ENST00000411266 212 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 TATDN1P1-201ENST00000414123 891 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 ARAFP2-201ENST00000440565 559 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL138878.2-201ENST00000440581 1241 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 CLIC4P1-201ENST00000453177 535 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RSU1P1-201ENST00000453416 441 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 snoU13.20-201ENST00000459180 104 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-599P-201ENST00000459383 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-1193P-201ENST00000459461 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL161747.1-201ENST00000480068 358 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RN7SL447P-201ENST00000494711 245 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 C1GALT1P2-201ENST00000510813 1104 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RN7SKP147-201ENST00000517154 244 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 C1DP5-201ENST00000525775 383 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC068339.2-201ENST00000534395 618 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC139697.1-201ENST00000548429 745 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL163952.1-202ENST00000569625 600 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 TVP23CP2-201ENST00000571473 623 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 MIR4660-201ENST00000583549 74 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 BNIP3P39-201ENST00000601077 554 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC133794.1-201ENST00000602731 914 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC110792.4-201ENST00000609843 298 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AC016957.2-201ENST00000616998 848 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-368P-201ENST00000620928 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RNU6-538P-201ENST00000622329 107 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AP001029.2-203ENST00000589795 4910 ntBASIC5.29□□□□□ -1.56
COL28A1Q2UY09 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL28A1Q2UY09 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 MFSD8-239ENST00000641590 2479 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 OR4K17-201ENST00000315543 1032 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 RNVU1-6-201ENST00000364688 164 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 SNORA67-201ENST00000384423 137 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 GAPDHP15-201ENST00000398586 975 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 P2RY10P2-201ENST00000416730 913 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 NIFKP3-201ENST00000417799 865 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 CRIP1P1-201ENST00000427567 185 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 RPL23AP4-201ENST00000427757 463 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 NDUFA5P10-201ENST00000432147 357 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL512661.1-201ENST00000434586 1253 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 MED28P3-201ENST00000444288 531 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 VDAC2P4-201ENST00000452925 711 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 NDUFA12P1-201ENST00000455914 406 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC103987.1-201ENST00000473394 348 ntBASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.28□□□□□ -1.56
COL28A1Q2UY09 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms