Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ADAM24P-201ENST00000398655 2101 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRKDCP78527 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 RPL21P17-201ENST00000397467 475 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 RN7SKP159-201ENST00000410657 292 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 RNU4-64P-201ENST00000410795 131 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 OR4K6P-201ENST00000416478 897 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AL390879.1-201ENST00000439143 386 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AL162151.2-201ENST00000448875 158 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC104849.1-201ENST00000462623 405 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.29□□□□□ -1.88
PRKDCP78527 MIR5195-201ENST00000583555 115 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AC010487.1-201ENST00000594408 1172 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 AL139124.1-201ENST00000609123 421 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
PRKDCP78527 AC140113.4-201ENST00000622087 222 ntBASIC3.29□□□□□ -1.88
PRKDCP78527 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.29□□□□□ -1.88
PRKDCP78527 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC3.29□□□□□ -1.88
PRKDCP78527 FTX-215ENST00000638681 9771 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 OR51H2P-202ENST00000641424 3046 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 RPS29P2-201ENST00000479278 136 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.28□□□□□ -1.88
PRKDCP78527 AL354984.3-201ENST00000604803 325 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
PRKDCP78527 AL391684.1-202ENST00000641293 1636 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 SNORA71.2-201ENST00000364941 134 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 AL390879.2-203ENST00000426943 1121 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AC046176.1-201ENST00000435260 1170 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC026427.2-201ENST00000506228 536 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 RN7SKP157-201ENST00000516174 282 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 FAM27D1-201ENST00000612308 341 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC3.28□□□□□ -1.88
PRKDCP78527 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 BBX-203ENST00000402543 3980 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 U3.28-201ENST00000391249 210 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC3.28□□□□□ -1.88
PRKDCP78527 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 PPIAP13-201ENST00000434706 478 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 NOTCH2P1-201ENST00000443481 624 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 NDUFB4P11-201ENST00000560510 395 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 RN7SL290P-201ENST00000578661 300 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AC005412.1-201ENST00000580812 1049 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AL683813.2-201ENST00000605245 502 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 AL450472.3-201ENST00000615578 367 ntBASIC3.28□□□□□ -1.88
PRKDCP78527 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC3.28□□□□□ -1.88
PRKDCP78527 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PRKDCP78527 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
PRKDCP78527 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.28□□□□□ -1.89
PRKDCP78527 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms