Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.72□□□□□ -1.33
LIG3P49916 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 RNA5SP321-201ENST00000362722 111 ntBASIC6.72□□□□□ -1.33
LIG3P49916 RNA5SP140-201ENST00000364524 92 ntBASIC6.72□□□□□ -1.33
LIG3P49916 SUGT1P2-201ENST00000379452 992 ntBASIC6.72□□□□□ -1.33
LIG3P49916 Y_RNA.408-201ENST00000383987 102 ntBASIC6.72□□□□□ -1.33
LIG3P49916 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
LIG3P49916 AL512430.2-201ENST00000406786 339 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AL033519.1-201ENST00000407266 307 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC6.72□□□□□ -1.33
LIG3P49916 Z82198.3-201ENST00000421145 199 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC004448.2-201ENST00000422360 586 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC6.72□□□□□ -1.33
LIG3P49916 RPL21P110-201ENST00000433345 446 ntBASIC6.72□□□□□ -1.33
LIG3P49916 TMX2P1-201ENST00000436507 708 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC241584.1-201ENST00000438469 1241 ntBASIC6.72□□□□□ -1.33
LIG3P49916 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 TCEA1P3-201ENST00000443005 880 ntBASIC6.72□□□□□ -1.33
LIG3P49916 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 AL034418.1-201ENST00000448675 860 ntBASIC6.72□□□□□ -1.33
LIG3P49916 RPL26P30-201ENST00000453533 435 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.72□□□□□ -1.33
LIG3P49916 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 MTAPP1-201ENST00000489154 819 ntBASIC6.72□□□□□ -1.33
LIG3P49916 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.72□□□□□ -1.33
LIG3P49916 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
LIG3P49916 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.72□□□□□ -1.33
LIG3P49916 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.72□□□□□ -1.33
LIG3P49916 AP001000.1-201ENST00000526843 742 ntBASIC6.72□□□□□ -1.33
LIG3P49916 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC6.72□□□□□ -1.33
LIG3P49916 MTCO3P24-201ENST00000572729 782 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.72□□□□□ -1.33
LIG3P49916 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
LIG3P49916 VN1R92P-201ENST00000598511 928 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC091133.5-201ENST00000603088 301 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.72□□□□□ -1.33
LIG3P49916 AC090525.3-201ENST00000605601 189 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC090186.1-201ENST00000605991 572 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.72□□□□□ -1.33
LIG3P49916 AL162377.2-201ENST00000624532 337 ntBASIC6.72□□□□□ -1.33
LIG3P49916 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.72□□□□□ -1.33
LIG3P49916 AC025048.6-202ENST00000627667 438 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC007603.3-201ENST00000636915 979 ntBASIC6.72□□□□□ -1.33
LIG3P49916 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 RBPJP6-201ENST00000411556 1431 ntBASIC6.72□□□□□ -1.33
LIG3P49916 AC232271.1-201ENST00000602455 2715 ntBASIC6.72□□□□□ -1.33
LIG3P49916 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.72□□□□□ -1.33
LIG3P49916 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 NLRP3P1-201ENST00000622303 1785 ntBASIC6.72□□□□□ -1.33
LIG3P49916 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
LIG3P49916 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.71□□□□□ -1.33
LIG3P49916 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
LIG3P49916 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC6.71□□□□□ -1.33
LIG3P49916 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.71□□□□□ -1.33
LIG3P49916 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.71□□□□□ -1.33
LIG3P49916 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC6.71□□□□□ -1.33
LIG3P49916 AL354854.1-201ENST00000455940 1363 ntBASIC6.71□□□□□ -1.33
LIG3P49916 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
LIG3P49916 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIG3P49916 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.71□□□□□ -1.34
LIG3P49916 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 AL355834.1-201ENST00000556602 3965 ntBASIC6.71□□□□□ -1.34
LIG3P49916 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 SNORA62.2-201ENST00000364672 152 ntBASIC6.71□□□□□ -1.34
LIG3P49916 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
LIG3P49916 SNORA75-201ENST00000384158 137 ntBASIC6.71□□□□□ -1.34
LIG3P49916 MIR320B1-201ENST00000390209 79 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AL161909.1-201ENST00000397390 712 ntBASIC6.71□□□□□ -1.34
LIG3P49916 RNU2-42P-201ENST00000410697 113 ntBASIC6.71□□□□□ -1.34
LIG3P49916 RN7SKP33-201ENST00000410942 340 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 AC114814.2-201ENST00000419195 485 ntBASIC6.71□□□□□ -1.34
LIG3P49916 FAM183DP-201ENST00000421987 399 ntBASIC6.71□□□□□ -1.34
LIG3P49916 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
LIG3P49916 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 AC013403.1-201ENST00000436954 263 ntBASIC6.71□□□□□ -1.34
LIG3P49916 CACYBPP1-201ENST00000438592 684 ntBASIC6.71□□□□□ -1.34
LIG3P49916 CRYGGP-201ENST00000443337 145 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.71□□□□□ -1.34
LIG3P49916 AL445991.1-201ENST00000450381 475 ntBASIC6.71□□□□□ -1.34
LIG3P49916 KF459542.1-201ENST00000450908 553 ntBASIC6.71□□□□□ -1.34
LIG3P49916 OR6C5P-201ENST00000452388 923 ntBASIC6.71□□□□□ -1.34
LIG3P49916 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms