Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC069154.1-201ENST00000432914 542 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 PPIAP17-201ENST00000438507 471 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 UBE2V1P5-201ENST00000440070 405 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AL034418.1-201ENST00000448675 860 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 RN7SL254P-201ENST00000460609 284 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 BNIP3P41-201ENST00000503774 571 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 ARL2BPP4-201ENST00000506854 471 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXA3O43365 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXA3O43365 OR6C7P-201ENST00000547875 934 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AL591767.3-201ENST00000554632 525 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 SNORA70D-201ENST00000578836 135 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 BNIP3P30-201ENST00000601184 574 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
HOXA3O43365 AL357078.3-201ENST00000607528 618 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 MIR6085-201ENST00000618314 110 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 MIR6811-201ENST00000620409 58 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 AC016717.3-201ENST00000624730 554 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC007996.1-201ENST00000620414 2821 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 AL139384.2-201ENST00000613809 3590 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 AC095050.2-201ENST00000510748 1458 ntBASIC5.24□□□□□ -1.57
HOXA3O43365 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HOXA3O43365 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXA3O43365 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXA3O43365 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
HOXA3O43365 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 ASNSP6-201ENST00000592770 1618 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC078880.4-201ENST00000617627 1749 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
HOXA3O43365 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC007993.1-201ENST00000621298 2430 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC003973.3-201ENST00000624863 2822 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 FUNDC2P3-201ENST00000334716 533 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 IGKV7-3-201ENST00000357453 298 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 RNU6-839P-201ENST00000363347 108 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 Y_RNA.302-201ENST00000364997 102 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 RPL5P20-201ENST00000403848 896 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 GCNT1P4-201ENST00000404096 329 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 ZNF603P-201ENST00000405613 487 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 RN7SKP222-201ENST00000410651 315 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 RN7SKP33-201ENST00000410942 340 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 MTND1P21-201ENST00000412991 285 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 FNDC3CP-201ENST00000420795 1155 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 EIF1P1-201ENST00000421436 341 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 PRUNEP1-201ENST00000425846 705 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC010975.2-201ENST00000427781 588 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC007679.3-201ENST00000434035 414 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 HMGB3P10-201ENST00000434734 572 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC242426.1-201ENST00000435270 960 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA3O43365 LARP1BP3-201ENST00000437229 869 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms