Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 VTI1BP4-201ENST00000427516 527 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC112492.2-201ENST00000432774 1030 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AL731534.1-201ENST00000434711 269 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC064862.5-201ENST00000440618 334 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC073072.2-201ENST00000447425 348 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AP002345.1-201ENST00000456493 928 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC079203.1-201ENST00000487972 404 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 MTCO1P31-201ENST00000506355 492 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC138517.1-201ENST00000515724 568 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 TMEM97P2-201ENST00000517841 403 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AP000873.5-201ENST00000533906 236 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AKIRIN1P1-201ENST00000547384 544 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC084757.1-201ENST00000559987 490 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 BGLT3-201ENST00000564523 994 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC090616.5-202ENST00000582111 297 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 MIR132-201ENST00000591554 101 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC079880.2-201ENST00000603790 1213 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 IGKV2OR2-1-201ENST00000605129 304 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 OR2BH1P-201ENST00000608850 864 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AL122023.1-201ENST00000622847 530 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC112204.3-201ENST00000623822 332 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 LINC01808-202ENST00000641680 1116 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 HDAC1P2-201ENST00000453661 1398 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC024651.2-201ENST00000562480 2098 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL359091.1-201ENST00000449048 1734 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RPL11P4-201ENST00000332269 436 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RN7SKP121-201ENST00000410842 305 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 Z68694.1-201ENST00000413929 841 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RNF19BPX-201ENST00000426224 625 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RPS7P14-201ENST00000426405 583 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 DEFB130D-201ENST00000426866 237 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC013403.1-201ENST00000436954 263 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 PPIAP10-201ENST00000438675 458 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 MTND4LP16-201ENST00000440828 295 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 RAB11AP1-201ENST00000442978 646 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 CXCR2P1-202ENST00000443392 1074 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 TXNP2-201ENST00000443918 295 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 MTND5P20-201ENST00000448677 143 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC112187.1-201ENST00000455837 479 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 SNRPCP11-201ENST00000492453 205 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 NDUFB4P12-201ENST00000513465 390 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 SNORA74.1-201ENST00000516320 180 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 Y_RNA.702-201ENST00000516843 96 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 BUD31P1-201ENST00000521828 359 ntBASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.01□□□□□ -1.29
CCDC39Q9UFE4 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms